Detailed information on CNT3084561


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FNB0|CHLH_ARATH, E-value = 4e-84

BLAST vs NONCODE:
NONPOPT001712, E-value = 1e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524187Vigna radiataSetaria italica38.6835.0781.66229forward
CNT30641519Vigna radiataNymphaea colorata23.1415.4684.67137forward
CNT30513968Vigna radiataJuglans regia33.2848.2887.82197forward
CNT30524804Vigna radiataPhaseolus vulgaris64.3649.895.8381forward
CNT30710265Vigna radiataGlycine max39.5351.3291.45234forward
CNT3017824Vigna radiataZea mays28.7238.6479.41170forward
CNT30347532Vigna radiataEragrostis tef38.8544.0680230forward
CNT30360704Vigna radiataLactuca sativa21.6227.5383.59128forward
CNT30426485Vigna radiataPapaver somniferum38.6813.8481.22229forward
CNT30575700Vigna radiataOryza barthii46.4532.8981.09275forward
CNT30585285Vigna radiataEchinochloa crusgalli38.8531.0880.43230forward
CNT30603839Vigna radiataOryza punctata32.7711.8982.47194forward

Expression of CNT3084561

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MILEYTFPTTRSRSLGGISSPSSGSVTSLSRLHCLAVLIIELTICAPRPVSLRD*

Sequence

>CNT3084561
GGACGATCAAGTGCAGCAATGTTCACCAGTGTAGCAACTGCTTCCAAAGCTGAGGGAGGCTCTCCAATGACATGAAGCCCACAAGGTAGCAGACGAGACT
CGATCTCCATGATCTTGGAATACACCTTTCCAACCACCAGATCACGCTCTTTAGGTGGGATCTCCTCACCCTCATCTGGTAGTGTCACATCTTTGTCAAG
ATTACACTGTTTAGCTGTGCTGATAATTGAACTCACAATTTGTGCCCCACGGCCGGTGTCTTTGAGGGACTGATATGAGGAGATGAGCTCACTTAACTGC
TTAAGACCTTTGTACAGTCCAGCATTTTCCGCTGGAGGAGTCAGATAGCTAATGGTGTTTGCATAACTTCTGCGCTTGGCTATGGTGGCCTCAGAAGGGT
TGTTTGCAGCATAGTAATACACATTTGGAATATTACCGTATTGTTTCCCATATACCAACAGATTTTCTCCATCTGCATTCAGATTGCCAGGGGGTTTCCC
CCAATTCTCTTCCAGTGCCGTGGAATAAGGAGTCAAATTTTGGTACTCTCGGACGCTCATTTTGTAAGCAACGTTCAAATTTGGACTGCTGA