Detailed information on CNT3031792


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 8e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514102Theobroma cacaoJuglans regia93.342.1585.37376forward
CNT30727458Theobroma cacaoCorchorus capsularis56.3335.1993.83227forward
CNT30712554Theobroma cacaoGlycine max69.7376.5785.77281forward
CNT30552959Theobroma cacaoOryza glaberrima16.1329.9587.6965forward
CNT30248818Theobroma cacaoAvena sativa20.8412.4383.3384forward
CNT30619939Theobroma cacaoCajanus cajan10047.8686.85403forward
CNT30426485Theobroma cacaoPapaver somniferum66.7516.2581.78269forward
CNT3036031Theobroma cacaoCucumis melo58.8139.3784.39237forward
CNT30575876Theobroma cacaoOryza barthii44.4228.1980.45179forward

Expression of CNT3031792

Peptides detected in this lncRNA

>peptide 1 (42 aa)
AINNNINPGPAKLFKTNCFHPVDSTKCISHWPHSNHPQDLTQ*

>peptide 2 (49 aa)
MLSVPHNTSAMVSGYFPPLSTFCLSINLSTTIFALCIAAAVGIACGSNA*

>peptide 3 (34 aa)
MFFPVGNTLGFLIGSPPGPGSTYFPSNACFKLPNS

>peptide 4 (40 aa)
EQLTTTSILGLPSSSRLTASTLLTLPNVSATGLTPIIHKT*

>peptide 5 (31 aa)
MNVLSCWQHFRISNWVTTRPRFNIFPLQCLF*

Sequence

>CNT3031792
GAGCAATTAACAACAACATCAATCCTGGGCCTGCCAAGCTCTTCAAGACTAACTGCTTCCACCCTGTTGACTCTACCAAATGTATCAGCCACTGGCCTCA
CTCCAATCATCCACAAGACTTGACCCAGTGACTCACCGTAAGTTTTAATGTTATCTGTTCCCCATAATACAAGTGCAATGGTCTCTGGATACTTTCCCCC
ATTGTCAACCTTCTGTCTTTCAATTAACCTATCTACCACAATTTTTGCACTCTGCATTGCAGCTGCTGTTGGAATAGCTTGTGGATCCAATGCATGAATG
TTCTTTCCTGTTGGCAACACTTTAGGATTTCTAATTGGGTCACCACCCGGCCCAGGTTCAACATATTTCCCCTCCAATGCTTGTTTTAAACTGCCCAACT
CAT