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Detailed information on CNT30398533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Triticum turgidumArabidopsis thaliana44.3711.3492.75138forward
CNT30730483Triticum turgidumCorchorus capsularis48.2334.0190150forward
CNT30199319Triticum turgidumPisum sativum44.376.8689.86138forward
CNT30504292Triticum turgidumNicotiana attenuata52.099.0890.74162forward
CNT3045035Triticum turgidumPrunus dulcis29.913.6893.5593forward
CNT30305635Triticum turgidumTriticum aestivum10088.3599.36311forward
CNT30543576Triticum turgidumBrassica napus47.5912.9191.89148forward
CNT30667320Triticum turgidumTriticum dicoccoides99.6851.8498.39310forward
CNT30139987Triticum turgidumLolium perenne29.911.5597.8593forward
CNT30230643Triticum turgidumAnanas comosus44.3718.2594.93138forward
CNT30655369Triticum turgidumRosa chinensis51.775.5791.3161forward
CNT30210627Triticum turgidumHelianthus annuus62.0616.3892.23193forward
CNT30338816Triticum turgidumEragrostis tef43.4119.0196.3135forward
CNT30357898Triticum turgidumLactuca sativa62.069.6791.71193forward
CNT30369893Triticum turgidumOryza glumipatula22.8315.8888.7371forward
CNT30422352Triticum turgidumPapaver somniferum60.4522.4691.49188forward
CNT30574487Triticum turgidumVitis vinifera37.9419.1289.83118forward
CNT30108418Triticum turgidumOryza longistaminata22.8315.5485.9271forward
CNT30575540Triticum turgidumOryza barthii27.3320.6891.7685reverse complement
CNT30556546Triticum turgidumPanicum hallii82.6467.189.49257forward

Expression of CNT30398533

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGRNIFTSYIICNCLNLKTFLKPIIYFTHIPEIPKQKNSAVELP*

Sequence

>CNT30398533
AGCGACTTGTACTAGAAAACAAGTAAGAGTAATTCCCCCTAAACAATAAAATATGTTGACATGGGAAGGAACATATTTACTAGTTATATCATCTGCAATT
GCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTACTCATATTCCAGAGATACCGAAACAAAAAAATTCCGCGGTCGAACTACCATAATATCT
AGAAATGTAGATCTTAAACTAGAAAGGCTTTTTTGGATGGAAAAACTCTGACTTTCGAGTTTTAGTTAGTAGAAACCTAATTGGTTAAAATTCCGTCAAG
TAAAACGGAAT