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Detailed information on CNT30139987

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378680	Lolium perenne	Arabidopsis thaliana	20.37	13.48	88.41	164	forward
CNT30730483	Lolium perenne	Corchorus capsularis	11.55	21.09	90.32	93	forward
CNT30407149	Lolium perenne	Beta vulgaris	8.82	28.98	87.32	71	forward
CNT30201892	Lolium perenne	Pisum sativum	20.25	20.35	87.12	163	forward
CNT30194117	Lolium perenne	Secale cereale	101.74	62.19	92.67	819	forward
CNT30286546	Lolium perenne	Triticum aestivum	46.09	25.02	94.07	371	forward
CNT30398533	Lolium perenne	Triticum turgidum	11.55	29.9	97.85	93	forward
CNT30553968	Lolium perenne	Oryza glaberrima	48.32	20.63	90.75	389	forward
CNT30230643	Lolium perenne	Ananas comosus	41.74	44.44	86.9	336	forward
CNT30338816	Lolium perenne	Eragrostis tef	47.95	54.37	89.38	386	forward
CNT30369893	Lolium perenne	Oryza glumipatula	28.07	50.56	88.05	226	forward
CNT30108418	Lolium perenne	Oryza longistaminata	28.07	49.45	88.05	226	forward
CNT30104459	Lolium perenne	Oryza rufipogon	44.22	99.16	87.92	356	forward
CNT30575540	Lolium perenne	Oryza barthii	23.85	46.72	88.54	192	reverse complement
CNT30499024	Lolium perenne	Digitaria exilis	49.57	26.22	85.96	399	forward
CNT30117031	Lolium perenne	Oryza nivara	33.91	14.82	92.31	273	forward
CNT30556546	Lolium perenne	Panicum hallii	11.55	24.28	91.4	93	forward

Expression of CNT30139987

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIMPKNIKLAHLSFFLSLMPVIRGLLTFLFPILDLFFFCIIVI*

>peptide 2 (35 aa)
YVDMGRNIFTSYIICNCLNLKPFLKPIIYFIEIGN*

Sequence

>CNT30139987
AATATGTTGACATGGGGAGGAACATATTTACTAGTTATATCATCTGCAATTGCCTGAATCTCAAGCCGTTCCTCAAACCAATCATATACTTTATTGAGAT
AGGTAACTAACCCAAGTCCCCCTCTAAGAGCCGTATAGGAAAATTTCATCTCGTACGGCTCAAGCAGAAACACACAAATTTTCAACGAATATTAGAAAAA
AGTTTCAAAACTTCATCAGCCACTGGATTGGGTTTATTTGCCTTGAAGATATGAAATAATAAAAATTCGGAAGATATTCTTTGTGATGATAATGCCAAAA
AATATCAAGTTGGCTCATCTGTCTTTCTTCCTTTCCCTTATGCCAGTCATTAGAGGCCTCTTGACTTTTCTCTTCCCTATTTTGGATTTGTTTTTTTTTT
GCATAATCGTAATATAGAAATTATCTTGTTGCGATCCTATGAATCAGTTCAATTAAAACCTTAGATTCATACTAGAGCCACGATGATTGAGTCTAAAGCT
AAACCAAGGGTTCTTCGAATAAGAACCACTTGATAATCATTTAGTGAATCAGTGTAATGATTCGACAAAATTGAGAGAAAAAAAGTTGTCTTTTAGGCAA
ACTAAATTGGAAGGAAGAAATTTTTTATTTTATTTAAGAACTACTTGAATTTTTCAGTCTGGTTGCGAGGTCTTAATAGTGAGTATGAATCATAGTTCCA
TTTTTTTTGATCCGCTCTATCTATTTCGTGTTCCAGATACTAGAATAAATAATATCTGACGAATTTGGAATCATCTTGATAGAGATAACAGGCCCTTTCT
ATGTA