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Detailed information on CNT30730483


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L934|PSBH_GOSHI, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30401838Corchorus capsularisBeta vulgaris48.7555.9987.44215forward
CNT30629037Corchorus capsularisVigna unguiculata27.8922.8291.06123forward
CNT30194600Corchorus capsularisPisum sativum46.2626.1287.75204forward
CNT30504292Corchorus capsularisNicotiana attenuata45.3511.2193200forward
CNT3045035Corchorus capsularisPrunus dulcis23.3615.1592.23103forward
CNT3090241Corchorus capsularisSolanum tuberosum35.1511.7692.26155forward
CNT30177378Corchorus capsularisSecale cereale34.0128.5790150forward
CNT30305635Corchorus capsularisTriticum aestivum34.9243.7590.26154forward
CNT30398533Corchorus capsularisTriticum turgidum34.0148.2390150forward
CNT30543576Corchorus capsularisBrassica napus36.0513.8790.57159forward
CNT30554238Corchorus capsularisOryza glaberrima34.0114.0190150forward
CNT30439089Corchorus capsularisAegilops tauschii34.019.2390150forward
CNT30667320Corchorus capsularisTriticum dicoccoides34.0125.0890.67150forward
CNT30139987Corchorus capsularisLolium perenne21.0911.5590.3293forward
CNT30231593Corchorus capsularisAnanas comosus46.2625.8991.18204forward
CNT30655369Corchorus capsularisRosa chinensis100.9115.4186.97445forward
CNT30210627Corchorus capsularisHelianthus annuus98.6436.9386.21435forward
CNT30679835Corchorus capsularisTriticum urartu32.6511.2287.5144forward
CNT30338816Corchorus capsularisEragrostis tef22.6814.0891100forward
CNT30357898Corchorus capsularisLactuca sativa97.9621.6487.73432forward
CNT30422352Corchorus capsularisPapaver somniferum55.3329.1589.75244forward
CNT30574487Corchorus capsularisVitis vinifera89.5764.0289.11395forward
CNT3053422Corchorus capsularisAmborella trichopoda43.317.8387.43191reverse complement
CNT3035458Corchorus capsularisCucumis melo46.0311.0192.12203forward
CNT30499024Corchorus capsularisDigitaria exilis22.686.5790100forward
CNT30117031Corchorus capsularisOryza nivara22.685.4392100forward
CNT30556546Corchorus capsularisPanicum hallii27.6631.8586.89122forward

Expression of CNT30730483

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MRRNIFTSYVICNRLNLEAFFEPIIDFTHIPEIQKQINFAVELPNQKGLKKVRELKV*

Sequence

>CNT30730483
CTAGACAATAAAATATGTTAACATGAGGAGGAACATATTTACTAGTTATGTCATCTGCAATCGCCTGAATCTCGAGGCGTTCTTCGAACCAATCATAGAC
TTTACTCATATTCCGGAAATACAGAAACAAATAAATTTCGCGGTCGAACTACCAAACCAAAAAGGGCTAAAAAAAGTCCGAGAACTAAAAGTTTAACTTT
TTGTATTGAAAAGCGAGGCTTCGTGGTTCTTGTGAATCTAATTCATTGAAATTCCATCCAGTAAAACGGAAGAATTATAAATCTCCAAAATAATAGATAA
GAATATCGCAAATAAAGCCATTGCGACACCCATCAAAGGAGTCGTTCCCCATCCAGGGGCTACTTTACCATATTCCGAATTCAATGGTTTCAAAAAATCC
CCTACAACAGTTCGTCTTGGACCAGATCTAGAACTACCCTC