CANTATAdb - search

Detailed information on CNT30543576

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTJ5|CYB6_OENEH, E-value = 1e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315736	Brassica napus	Corylus avellana	22.86	96.32	88.55	262	forward
CNT30730483	Brassica napus	Corchorus capsularis	10.56	27.44	93.39	121	forward
CNT30632354	Brassica napus	Vigna unguiculata	58.9	46.62	90.07	675	forward
CNT30199319	Brassica napus	Pisum sativum	39.97	22.76	91.48	458	forward
CNT30504292	Brassica napus	Nicotiana attenuata	57.5	36.94	90.9	659	forward
CNT3090412	Brassica napus	Solanum tuberosum	25.31	13.13	91.72	290	forward
CNT30193370	Brassica napus	Secale cereale	56.89	40.37	89.72	652	forward
CNT30286546	Brassica napus	Triticum aestivum	56.11	43.36	89.27	643	forward
CNT30226752	Brassica napus	Hordeum vulgare	15.36	43.89	88.64	176	forward
CNT30398533	Brassica napus	Triticum turgidum	12.91	47.59	91.89	148	forward
CNT30554238	Brassica napus	Oryza glaberrima	56.98	60.97	89.89	653	forward
CNT30439089	Brassica napus	Aegilops tauschii	55.85	39.36	89.53	640	forward
CNT30667320	Brassica napus	Triticum dicoccoides	31.06	59.53	89.61	356	forward
CNT30230643	Brassica napus	Ananas comosus	30.8	46.69	90.65	353	forward
CNT30655369	Brassica napus	Rosa chinensis	89.18	35.39	89.92	1022	forward
CNT30210627	Brassica napus	Helianthus annuus	70.51	68.59	89.6	808	forward
CNT30679835	Brassica napus	Triticum urartu	39.88	35.62	88.84	457	forward
CNT30338816	Brassica napus	Eragrostis tef	12.57	20.28	90.97	144	forward
CNT30595910	Brassica napus	Oryza meridionalis	26.09	100	90.97	299	forward
CNT30357898	Brassica napus	Lactuca sativa	75.57	43.39	89.95	866	forward
CNT30152830	Brassica napus	Prunus persica	22.86	3.73	86.26	262	forward
CNT30422352	Brassica napus	Papaver somniferum	37.87	51.85	91.47	434	forward
CNT3057481	Brassica napus	Amborella trichopoda	11.43	37.22	85.5	131	forward
CNT3035458	Brassica napus	Cucumis melo	88.92	55.26	89.4	1019	forward
CNT30499024	Brassica napus	Digitaria exilis	56.02	42.18	88.47	642	forward
CNT30117031	Brassica napus	Oryza nivara	56.11	34.91	89.58	643	forward
CNT30556546	Brassica napus	Panicum hallii	23.04	68.93	87.12	264	forward
CNT30336835	Brassica napus	Cynara cardunculus	23.04	42.38	85.61	264	forward

Expression of CNT30543576

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ILIMFHPLISWIFGFYGAHSSTTSSGIMIIEKILFK*

>peptide 2 (57 aa)
NPDYVPSLNLLDFWILRSPLIHDIVGYYDHRKDSLQVNQPIPCMGLTQWLEQRHIWL*

>peptide 3 (47 aa)
MRRNIFTSYIVCNRLNLKTFFEPIINFTHIPEIYNAEKNFAVELPKEN

Sequence

>CNT30543576
TAATCCTGATTATGTTCCATCCCTTAATCTCCTGGATTTTTGGATTTTACGGAGCCCACTCATCCACGACATCGTCGGGTATTATGATCATAGAAAAGAT
TCTCTTCAAGTGAACCAGCCTATCCCCTGTATGGGGCTTACACAGTGGTTGGAACAAAGACACATTTGGTTGTGAATTCCAATGTAGCAGATAAAGTCAT
ATTTCTGCACGGCCCGATCAATAGTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCATAGAATTCCCTTCAACTTTTTATGTCAAAAAAATAATAC
AATATTGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTTTAATAATCCATATTTATAGCAATAAAATACGATTGTTCCTTCACCAAGTAAT
AAGATAAATTAGTAATTAAAAATATCTAGAATCTATATTATTTATAAGGGACCAGAAATACCTTGCTTACGTATCATTAAGAAATGCATTAACATAAATA
CAGCCGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAAAACGAGTCAAAGTGGATTGTCCAACACTAGCACTTCCGCGTAATAATTCTACAAGAGG
CGATCCTATTACCGGAATAGCGTCAGGTACACCTGTTACAATTTTGACTGCCCAATAGCCAATTTGATCCCAAGGTAAAGAATAACCTGTTACACCAAAA
GATGCGGTCAATACACCCAGAACCACACCAGTAACCCAAGTTAATTCGCGAGGTTTTTTAAAACCACCGGTGAGGTATACACGAAATACGTGCAGGATCA
TCATTAGGACCATCATACTTGCCGACCATCGATGAACTGATCGGATTAACCAACCAAAGTTAGCTTCAGTCATTATATATTGAACAGAAGCAAAAGCCTC
AGTAACAGTTGGACGGTAATAAAAAGTCATAGCAAATCCCGTAGCTACTTGTACTAAAAAACAAGTAAGGGTAATTCCTCCTAGACAATAAAATATGTTG
ACATGCGGAGGAACATATTTACTAGTTATATCGTCTGCAATCGCTTGAATCTCAAGACGTTCTTCGAACCAATCATAAACTTTACTCATATTCCGGAAAT
ATACAATGCAGAAAAAAATTTCGCGGTCGAACTACCAAAGGAGAAT