Detailed information on CNT30575540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194117Oryza barthiiSecale cereale72.0222.4891.89296reverse complement
CNT30305635Oryza barthiiTriticum aestivum20.6824.1591.7685reverse complement
CNT30398533Oryza barthiiTriticum turgidum20.6827.3391.7685reverse complement
CNT30511491Oryza barthiiSolanum lycopersicum41.3619.8182.35170forward
CNT30553968Oryza barthiiOryza glaberrima72.2615.7598.32297reverse complement
CNT30439089Oryza barthiiAegilops tauschii20.685.2390.5985reverse complement
CNT30667320Oryza barthiiTriticum dicoccoides20.6814.2191.7685reverse complement
CNT30139987Oryza barthiiLolium perenne43.5522.2489.39179reverse complement
CNT30231593Oryza barthiiAnanas comosus45.523.7388.77187reverse complement
CNT30369893Oryza barthiiOryza glumipatula73.4867.5698.01302reverse complement
CNT30108418Oryza barthiiOryza longistaminata73.4866.0897.35302reverse complement
CNT30104459Oryza barthiiOryza rufipogon44.5350.9796.72183reverse complement
CNT30116377Oryza barthiiOryza nivara91.48100.5397.07376reverse complement

Expression of CNT30575540

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MDQEKKNETMIHINYSDLATRLKKIQVVLNKKKKRKNLPSNFVCPKLGFCMDLLDLDVN*

>peptide 2 (32 aa)
FHPLASFYFKLYISRHSGSSTVEFFGFGISGI*

Sequence

>CNT30575540
TTTCCATCCGCTAGCCTCTTTCTACTTTAAGCTCTATATTTCTAGACATTCTGGTAGTTCGACCGTGGAATTTTTTGGTTTCGGTATCTCTGGAATATGA
GTGGGTGACTTGTTAGAATTTGCTCCTATTGATAATACATAGAAAGCACCTGTTATCTCTATCAAGATGATTCTAATTCGTCGGATATTATTTATTCTAG
TATNTGGAACACGAAATAGATAGAATGGATCAAGAAAAAAAAAATGAAACTATGATTCATATTAACTATTCAGACCTCGCAACCAGACTGAAAAAAATTC
AAGTAGTTCTTAATAAAAAGAAAAAAAGAAAAAATCTTCCTTCCAATTTTGTTTGCCCAAAATTGGGATTTTGCATGGATTTGCTTGATCTAGATGTAAA
CTAGAATGCCT