Detailed information on CNT3045035


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004605, E-value = 4e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Prunus dulcisArabidopsis thaliana23.8213.3183.95162forward
CNT30730483Prunus dulcisCorchorus capsularis15.1523.3692.23103forward
CNT30407149Prunus dulcisBeta vulgaris9.5626.5389.2365forward
CNT30201895Prunus dulcisPisum sativum16.6220.7795.58113forward
CNT30305635Prunus dulcisTriticum aestivum14.1227.2793.7596forward
CNT30398533Prunus dulcisTriticum turgidum13.6829.993.5593forward
CNT30553968Prunus dulcisOryza glaberrima27.659.9790.96188forward
CNT30229236Prunus dulcisAnanas comosus11.7626.7691.2580reverse complement
CNT30338816Prunus dulcisEragrostis tef27.6526.4890.43188forward
CNT30117031Prunus dulcisOryza nivara27.6510.2190.43188forward
CNT30556546Prunus dulcisPanicum hallii12.9422.9889.7788forward

Expression of CNT3045035

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPKNQDGSFVYILYIDRYRPLESSIYLFYLLLFMCSAALLLFSLLLIGIILLRPY*

>peptide 2 (31 aa)
MTENPPRRTVYENFISYGSKQKHTNTXXXXF*

Sequence

>CNT3045035
TAGACAATAAAATATGTTGACTTGAGGAGGAACATATTTACTAGTTATATCATCGGCAATTGCCTGAATCTCAAGACGTTCTTCGAACCAATCATAGATT
TTATTGAGATAGGTAAATGACGGAGAATCCCCCCCGGAGAACCGTATATGAAAATTTCATCTCATACGGCTCAAAACAGAAACACACAAATACTAGNNNN
NNNNNNTTCTAACGGATGTGTGTAATAGAAAGTTTTAAATTTCTTAATTCTATGATTCATTTTTTCTGAAGATACGAAAGAATAAAAATCCGAAAACTCC
TCTTTGTGGTTATAATGCCAAAAAATCAAGACGGCTCATTCGTCTATATTCTATATATTGATCGTTATAGGCCTCTTGAATCTTCTATTTACCTATTTTA
TTTGTTGTTATTTATGTGTAGTGCGGCTTTACTGCTGTTTTCTTTATTATTGATAGGAATTATCTTGTTAAGACCCTATTAATTGATTAAAACCTCAGAT
TCATACTAGAACCACGATGATTCAATAAAACCCTTTCAAACTAAGTCCCAAAATTCCCTGAGTAAGAACCGTTGGATCATCACTTATTCAATGAATAGAT
ATAATGACTAAAAATCCAAAGAAACCTTTGTCCTTTGATCAAAATAAGCCTAAACGAAAGTTTAGTTTGAAAAAAAAAAA