Detailed information on CNT30574487


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332U8|PSBH_LACSA, E-value = 7e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730483Vitis viniferaCorchorus capsularis64.0289.5789.11395forward
CNT30401838Vitis viniferaBeta vulgaris53.6586.287.01331forward
CNT30629037Vitis viniferaVigna unguiculata19.9422.8291.06123forward
CNT30194600Vitis viniferaPisum sativum51.740.8586.21319forward
CNT30504292Vitis viniferaNicotiana attenuata83.9529.0488.61518forward
CNT3090241Vitis viniferaSolanum tuberosum46.6821.8586.46288forward
CNT30177378Vitis viniferaSecale cereale23.0127.0587.32142forward
CNT30305635Vitis viniferaTriticum aestivum19.1233.5289.83118forward
CNT30398533Vitis viniferaTriticum turgidum19.1237.9489.83118forward
CNT30147444Vitis viniferaMedicago truncatula29.1753.2583.33180reverse complement
CNT30439089Vitis viniferaAegilops tauschii21.728.2486.57134forward
CNT30662325Vitis viniferaTriticum dicoccoides13.2939.2390.2482forward
CNT30231593Vitis viniferaAnanas comosus70.8355.4685.13437forward
CNT30655369Vitis viniferaRosa chinensis101.321.6486.56625forward
CNT30210627Vitis viniferaHelianthus annuus72.4537.9588.14447forward
CNT30679835Vitis viniferaTriticum urartu23.0111.0784.51142forward
CNT30357898Vitis viniferaLactuca sativa99.1930.6689.38612forward
CNT30422352Vitis viniferaPapaver somniferum80.2359.1489.09495forward
CNT3053422Vitis viniferaAmborella trichopoda65.816.6584.48406reverse complement
CNT3035458Vitis viniferaCucumis melo37.612.5888.36232forward

Expression of CNT30574487

Peptides detected in this lncRNA

>peptide 1 (29 aa)
METATLVAISISGLLVSFTGYALYTAFGQP

>peptide 2 (34 aa)
MIHFVLKRRGPRGSFGSNSLKFRPIKQKNYKSPK*

>peptide 3 (39 aa)
ASYRICNRLNLETFFEPIIDFTHIPEIQKQRNSAVELPK*

Sequence

>CNT30574487
GCTAGTTATAGAATCTGCAATCGCCTGAATCTCGAGACGTTCTTCGAACCAATCATAGACTTTACTCATATTCCGGAAATACAGAAACAAAGAAATTCCG
CGGTCGAACTACCAAAATAGAATGGGCTAGAAATCCGAGCCCTAAATGATTCACTTTGTATTGAAAAGGCGAGGACCTCGTGGTTCTTTTGGATCTAATT
CATTGAAATTCCGTCCAATAAAACAGAAGAATTATAAATCTCCAAAATAATAGATAGGAATACCGCAAATAGAGCCATTGCGACACCCATTAAAGGAGTA
GTTCCCCATCCAGGAGCTACTTTACCATATTCCGAATTCAACGGTTTTAATAAATCCCCTATAGTAGTTTGTTTGTCTTGGACCAGATCTAGAACTACCC
TCAACGGTTTTTGTAGCCATAAATCCTATTGTATTCATTGAGATCTGTTGACTTTGTATACCATTCCGTTGTAAATAAACGATCTTATCATAGATCCTTT
GTGGTCTTGAAATTCCATTTTATAATAATGGAAACAGCAACCCTAGTCGCCATCTCTATATCTGGTTTACTTGTAAGTTTTACTGGGTACGCCTTATATA
CCGCCTTTGGGCAGCCC