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Detailed information on CNT30108418


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Oryza longistaminataArabidopsis thaliana28.6710.7683.21131forward
CNT3090241Oryza longistaminataSolanum tuberosum31.5110.9381.25144forward
CNT30194117Oryza longistaminataSecale cereale51.217.7794.87234forward
CNT30305635Oryza longistaminataTriticum aestivum15.5420.1785.9271forward
CNT30398533Oryza longistaminataTriticum turgidum15.5422.8385.9271forward
CNT30511491Oryza longistaminataSolanum lycopersicum31.5116.7881.94144reverse complement
CNT30553968Oryza longistaminataOryza glaberrima70.2417.0297.51321forward
CNT30662325Oryza longistaminataTriticum dicoccoides15.5433.9785.9271forward
CNT30139987Oryza longistaminataLolium perenne38.7321.9991.53177forward
CNT30231593Oryza longistaminataAnanas comosus34.3519.9288.54157forward
CNT30369893Oryza longistaminataOryza glumipatula87.3189.2698.75399forward
CNT30104459Oryza longistaminataOryza rufipogon39.8250.797.8182forward
CNT30575540Oryza longistaminataOryza barthii66.0873.4897.35302reverse complement
CNT30116377Oryza longistaminataOryza nivara64.5578.8898.98295forward

Expression of CNT30108418

Peptides detected in this lncRNA

>peptide 1 (32 aa)
QFWANKIGRKNFSFFLFIKNYLNFFSLVARSE*

Sequence

>CNT30108418
CCAATTTTGGGCAAACAAAATTGGAAGGAAGAATTTTTCTTTTTTTCTTTTTATTAAGAACTACTTGAATTTTTTCAGTCTGGTTGCGAGGTCTGAATAG
TTAATATGAATCATAGTTTCATTTTTTTTTCTTGATCCACTCTATCTATTTCGTGTTCCAGATACTAGAATAAATAATATCCGACGAATTAGAATCATCT
TGATAGAGATAACAGGTGCTTTCTATGTATTATCAATAGGAGCAAATTCTAACAAGTCACACACTCATATTCCAGAGATACCGAAACCAAAAAAATCACG
GTCGAACTACGAGAATGTCTAGAAATATAGAGCTTAAAGTAGAAAGAGGCTCTTTTGGATGGAGAAACTATAGAACTTAGTAGTTCTCGTTAAGGTTGTT
TCTGCTGTAACCCTTTAAGGTGACATTCTTAGAAAATCATACCCATTACACCATGCC