« Back to Panicum hallii search


Detailed information on CNT30556546


BLAST search results

BLAST vs Swiss-Prot:
sp|P49390|CYB_BRANA, E-value = 5e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Panicum halliiArabidopsis thaliana48.0415.1287.5184forward
CNT30730483Panicum halliiCorchorus capsularis27.4223.8188.57105forward
CNT30632354Panicum halliiVigna unguiculata66.3217.5485.04254forward
CNT30199319Panicum halliiPisum sativum66.3212.6286.22254forward
CNT30504292Panicum halliiNicotiana attenuata67.8914.5786.92260forward
CNT3045035Panicum halliiPrunus dulcis22.9812.9489.7788forward
CNT3090412Panicum halliiSolanum tuberosum64.4911.1985.43247forward
CNT30193370Panicum halliiSecale cereale10023.7291.12383forward
CNT30286546Panicum halliiTriticum aestivum66.3217.1392.52254forward
CNT30398533Panicum halliiTriticum turgidum67.182.6489.49257forward
CNT30543576Panicum halliiBrassica napus68.9323.0487.12264forward
CNT30554238Panicum halliiOryza glaberrima10035.7690.86383forward
CNT30439089Panicum halliiAegilops tauschii10023.5590.08383forward
CNT30667320Panicum halliiTriticum dicoccoides98.1762.8890.69376forward
CNT30139987Panicum halliiLolium perenne24.2811.5591.493forward
CNT30230643Panicum halliiAnanas comosus66.3233.689.76254forward
CNT30655369Panicum halliiRosa chinensis68.939.1486.74264forward
CNT30210627Panicum halliiHelianthus annuus71.0223.0986.03272forward
CNT30679835Panicum halliiTriticum urartu71.2821.2887.91273forward
CNT30338816Panicum halliiEragrostis tef35.5119.1593.38136forward
CNT30357898Panicum halliiLactuca sativa71.0213.6385.66272forward
CNT30422352Panicum halliiPapaver somniferum71.832.8686.55275forward
CNT3035458Panicum halliiCucumis melo68.9314.3286.74264forward
CNT30499024Panicum halliiDigitaria exilis66.3216.6990.94254forward
CNT30117031Panicum halliiOryza nivara66.3213.7991.34254forward

Expression of CNT30556546

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MRRNIFTSYIIRNFLNLKTSLKPIIYFTHIPEIPRQKKIHGRNTRMSRNVELKIERLFLDAKTMTS*

Sequence

>CNT30556546
ATGACCTGATCGGATTAACCAACCAAAGTTGGCCTCTATTATTATATATTGAACGGAGGGAAAAGCCTCTGTAACGGTTGGTCGGTAGTAAAAAGTCATA
GCAAAACCCATAGCGACTTGTACTAGAAAACAAGTAAGTGCAATTCCCACTAAACAATAAAAATATGTTAACATGAGGAGGAACATATTTACTAGTTATA
TCATCCGCAATTTCTTGAATCTCAAGACGTCACTCAAACCAATCATATACTTTACTCATATTCCAGAGATACCGAGACAAAAAAAAATCCACGGTCGAAA
TACGAGAATGTCTAGAAATGTGGAGCTTAAAATAGAAAGGCTTTTTCTGGATGCTAAAACTATGACTTCATAGTTTTTGTTAG