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Detailed information on CNT30369893


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194117Oryza glumipatulaSecale cereale60.8520.6592.28272forward
CNT30305635Oryza glumipatulaTriticum aestivum15.8820.1788.7371forward
CNT30398533Oryza glumipatulaTriticum turgidum15.8822.8388.7371forward
CNT30511491Oryza glumipatulaSolanum lycopersicum32.2116.7881.25144reverse complement
CNT30553968Oryza glumipatulaOryza glaberrima66.4415.7597.64297forward
CNT30662325Oryza glumipatulaTriticum dicoccoides15.8833.9788.7371forward
CNT30139987Oryza glumipatulaLolium perenne34.6819.2590.32155forward
CNT30231593Oryza glumipatulaAnanas comosus35.1219.9288.54157forward
CNT30108418Oryza glumipatulaOryza longistaminata84.1282.2898.94376forward
CNT30104459Oryza glumipatulaOryza rufipogon35.3544.0197.47158forward
CNT30575540Oryza glumipatulaOryza barthii62.1967.6498.2278reverse complement
CNT30116377Oryza glumipatulaOryza nivara60.8572.7398.53272forward

Expression of CNT30369893

Peptides detected in this lncRNA

>peptide 1 (31 aa)
FWANKIGRKKFSFFIFIKNYLIFFSLVARSE*

Sequence

>CNT30369893
TTTTGGGCAAACAAAATTGGAAGGAAGAAATTTTCTTTTTTTATTTTTATTAAGAACTACTTGATTTTTTTCAGTCTGGTTGCGAGGTCTGAATAGTTAA
TATGAATCATAGTTTCATTTTTTTTTCTTGATCCATTCTATCTATTTCGTGTTCCAGATACTAGAATAAATAATATCCGACGAATTAGAATCATCTTGAT
AGAGATAACAGGTGCTTTCTATGTATTATCAATAGGAGCAAATTCTAACAAGTCACCCACTCATATTCCAGAGATACCGAAACCAAAAAAATCACGGTCG
AACTACCAGAATGTCTAGAAATGTAGAGCTTAAAGTAGAAAGAGGCTCTTTTGGATGGAGAAACTATAGAACTTAGTAGTTCTCGTTAAGGTTGTTTCTG
CTGTAACCCTTTAAGGTGACATTCTTAGAAAATCATACCCATTACAC