Detailed information on CNT30338816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378680Eragrostis tefArabidopsis thaliana30.2817.6789.77215forward
CNT30730483Eragrostis tefCorchorus capsularis14.0822.6891100forward
CNT30407149Eragrostis tefBeta vulgaris9.4427.3586.5767forward
CNT30632354Eragrostis tefVigna unguiculata28.4513.9589.6202forward
CNT30201892Eragrostis tefPisum sativum28.5925.3491.63203forward
CNT30504292Eragrostis tefNicotiana attenuata20.568.1892.47146forward
CNT3045035Eragrostis tefPrunus dulcis26.4827.6590.43188forward
CNT3090412Eragrostis tefSolanum tuberosum32.6810.5186.21232forward
CNT30194117Eragrostis tefSecale cereale60.4232.5792.54429forward
CNT30286546Eragrostis tefTriticum aestivum59.8628.6691.29425forward
CNT30398533Eragrostis tefTriticum turgidum19.0143.4196.3135forward
CNT30543576Eragrostis tefBrassica napus20.2812.5790.97144forward
CNT30553968Eragrostis tefOryza glaberrima60.4222.7593.94429forward
CNT30439089Eragrostis tefAegilops tauschii20.288.8695.83144forward
CNT30667320Eragrostis tefTriticum dicoccoides20.2824.0896.53144forward
CNT30139987Eragrostis tefLolium perenne53.847.4589.27382forward
CNT30230643Eragrostis tefAnanas comosus60.757.0186.77431forward
CNT30210627Eragrostis tefHelianthus annuus20.2812.2294.44144forward
CNT3035458Eragrostis tefCucumis melo20.287.8191.67144forward
CNT30499024Eragrostis tefDigitaria exilis62.9629.3789.93447forward
CNT30117031Eragrostis tefOryza nivara50.719.5492.78360forward
CNT30556546Eragrostis tefPanicum hallii19.1535.5193.38136forward

Expression of CNT30338816

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKISSRTAQAETHKFSTDIRKKKVQNFMSHGIGSICLEDIK*

>peptide 2 (47 aa)
MNQSLSPLCNEVNLMPNVLWMRLLPRPGVTTSYSIHYTKLYDSSNLY*

>peptide 3 (32 aa)
MRRNIFTSYIIRNCLNLKTFLKPIIYFIEIGN*

Sequence

>CNT30338816
ACTACACTAATTCCTCAACAAAAAAAGCTTGCTCTAATTTCTAAAATCTTTTACCAAATCATAACGAAGTAATGAACCAGAGTTTGTCTCCTCTATGTAA
CGAGGTTAATCTTATGCCTAACGTTCTGTGGATGAGGTTGTTGCCTCGTCCTGGCGTAACAACTTCGTATAGCATACATTATACGAAGTTATACGACAGT
AGCAACCTGTACTAAAAAACAAGTAAGTGTAATTCCCCCTAAACAATAAAATATGTTGACATGAGGAGGAACATATTTACTAGTTATATCATCCGCAATT
GCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTATTGAGATAGGTAACTAGCCCGACTCCCCCTCCGAGAACCGTATATGAAAATTTCATCT
CGTACGGCTCAAGCAGAAACACACAAATTTTCAACGGATATTAGAAAAAAAAAGGTTCAAAACTTCATGAGCCACGGGATTGGATCAATTTGCCTTGAAG
ATATTAAATAAGAAAAATCCAGAATTTCTTCTTTGTGATGATAATGCCAAAAAATCTCAAGTTGGCTCATCTGTCTTTCCCTTATGTTGATCATTAGTGG
CCTCTTGACTTTTCTCTTCCCTATTTTTTTATATTTTATTTTTATTAGTAATAAATAATCAAAAGTTCATTGTGGTTTTCTAATAGAAATTAGTAATATG
ATCCTATGAA