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Detailed information on CNT30378680

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30730484	Arabidopsis thaliana	Corchorus capsularis	15.53	29.03	88.89	189	reverse complement
CNT30201892	Arabidopsis thaliana	Pisum sativum	21.04	31.96	91.02	256	forward
CNT3045035	Arabidopsis thaliana	Prunus dulcis	14.38	25.74	89.14	175	forward
CNT30194117	Arabidopsis thaliana	Secale cereale	20.87	19.29	89.76	254	forward
CNT30286546	Arabidopsis thaliana	Triticum aestivum	20.87	17.13	89.76	254	forward
CNT30398533	Arabidopsis thaliana	Triticum turgidum	11.34	44.37	92.75	138	forward
CNT30553968	Arabidopsis thaliana	Oryza glaberrima	21.04	13.57	89.84	256	forward
CNT30667320	Arabidopsis thaliana	Triticum dicoccoides	15.04	30.6	92.35	183	forward
CNT30139987	Arabidopsis thaliana	Lolium perenne	13.48	20.37	88.41	164	forward
CNT30230643	Arabidopsis thaliana	Ananas comosus	20.87	33.6	90.55	254	forward
CNT30338816	Arabidopsis thaliana	Eragrostis tef	17.67	30.28	89.77	215	forward
CNT30595910	Arabidopsis thaliana	Oryza meridionalis	6.74	27.42	89.02	82	forward
CNT30422352	Arabidopsis thaliana	Papaver somniferum	15.04	21.86	92.35	183	forward
CNT30108418	Arabidopsis thaliana	Oryza longistaminata	10.76	28.67	83.21	131	forward
CNT30499024	Arabidopsis thaliana	Digitaria exilis	20.87	16.69	87.8	254	forward
CNT30117031	Arabidopsis thaliana	Oryza nivara	20.87	13.79	89.37	254	forward
CNT30556546	Arabidopsis thaliana	Panicum hallii	15.12	48.04	87.5	184	forward

Expression of CNT30378680

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RVKVDCPTLALPRNNSTRGDPITGIASASVTVGR*

>peptide 2 (59 aa)
MRRNIFTSYIICNRLNLKTFFEPIINFIEIGKPRLLPLQELYMRISSRTAQTKKDPNTD*

>peptide 3 (84 aa)
MEYKVLNLSLIQYYFLLFKDMKESKCESSSLWLNAKKSSKLIRLYVVLIVTGLLNLLDYLSLLSFFIWYLYGTGTGISSCFLYY*

>peptide 4 (77 aa)
MNIRRSKTILIKMTDPILCTIHRVNSNKSHTHIPEIYNAEKNFAVELPKENRLKLLDLHTLLFCIELKARTSRFFSV*

Sequence

>CNT30378680
CGAGTCAAAGTGGATTGTCCAACACTAGCACTTCCGCGTAATAATTCTACAAGAGGTGATCCTATTACCGGAATAGCGTCAGCTTCAGTAACGGTTGGAC
GGTAATAAAAAGTCATAGCAAATCCCGTAGCTACTTGTACTAAAAAACAAGTAAGGGTAATTCCGCCTAGACAATAAAATATGTTGACATGCGGAGGAAC
ATATTTACTAGTTATATCATCTGCAATCGCCTGAATCTCAAGACGTTCTTCGAACCAATCATAAACTTTATTGAGATAGGTAAACCAAGGTTACTCCCCC
TCCAAGAACTGTATATGAGAATTTCATCTCGTACAGCTCAAACAAAAAAAGACCCAAATACTGATTGAAACAGATATGGAATATAAAGTTTTAAACTTGT
CTCTCATTCAATATTATTTTTTATTATTTAAAGATATGAAAGAGTCAAAATGCGAAAGCTCGTCTTTGTGGTTAAATGCCAAAAAATCAAGTAAGCTCAT
TCGTCTTTATGTTGTGTTGATCGTTACAGGCCTCTTGAATCTTCTAGATTACCTATCTTTATTGTCTTTTTTTATTTGGTATTTGTATGGAACGGGGACA
GGGATTTCTTCTTGTTTTCTTTATTATTGATAGGAATTCTCTTGTTAAGACCCTACTTAACTAATCAATTGAAACCTCAGATTCATACGAGAACCACGAT
AATTTAATGAAACCTTCAAAGTCCAAAGTTCACTGAGTGAGAACCATTGGATCATCACTTATTCAATAAAAAAAAAGCTATAATGACTAAAAACATAAAA
TACAAAGAAGCGTTTGTCCTTTGATCCAAATAAGAGTTTAAAAGCAGAAAATTTTTTTGATTTATTAAAGTTTATAAGATAGAACGGAAAGAAGTCCGGC
TACGAGGTTTGAGTATTTAAGTATGAATCATAGTTCGAATACTTTGTGATCTATTTGATCTATTTCGTGCTCCAGATACTCGAATGAATATCCGACGAAG
TAAAACCATCTTGATAAAGATGACAGACCCCATTCTCTGTACTATCCATAGGGTCAATTCTAACAAGTCACACACTCATATTCCGGAAATATACAATGCA
GAAAAAAATTTCGCGGTCGAACTACCAAAGGAGAATAGGCTAAAATTGTTAGACCTGCATACTTTACTTTTTTGTATCGAGCTAAAAGCTAGAACTTCAA
GATTCTTCTCAGTCTAA