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Detailed information on CNT30230643


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315736Ananas comosusCorylus avellana20.7757.7287.26157forward
CNT30378680Ananas comosusArabidopsis thaliana33.620.8790.55254forward
CNT30407149Ananas comosusBeta vulgaris8.8627.3589.5567forward
CNT30632354Ananas comosusVigna unguiculata56.0829.2890.33424forward
CNT30199319Ananas comosusPisum sativum56.0821.0789.39424forward
CNT30194117Ananas comosusSecale cereale76.5943.9689.64579forward
CNT30286546Ananas comosusTriticum aestivum78.740.1289.08595forward
CNT30398533Ananas comosusTriticum turgidum18.2544.3794.93138forward
CNT30543576Ananas comosusBrassica napus46.6930.890.65353forward
CNT30553968Ananas comosusOryza glaberrima84.5233.8890.14639forward
CNT30667320Ananas comosusTriticum dicoccoides45.958.0394.24347forward
CNT30139987Ananas comosusLolium perenne44.4441.7486.9336forward
CNT30210627Ananas comosusHelianthus annuus46.6929.9790.37353forward
CNT30679835Ananas comosusTriticum urartu22.7513.4194.19172forward
CNT30338816Ananas comosusEragrostis tef56.8860.5686.74430forward
CNT30595910Ananas comosusOryza meridionalis14.4236.4597.25109forward
CNT30357898Ananas comosusLactuca sativa46.6917.6990.93353forward
CNT30422352Ananas comosusPapaver somniferum46.5642.0591.48352forward
CNT3035458Ananas comosusCucumis melo46.6919.1490.08353forward
CNT30499024Ananas comosusDigitaria exilis58.0728.8491.57439forward
CNT30117031Ananas comosusOryza nivara58.0723.8394.99439forward
CNT30556546Ananas comosusPanicum hallii33.666.3289.76254forward

Expression of CNT30230643

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLIVTGLLNLLFPIFYLLFDLFFFCAYCGFTLVLLLIGILLLRPYESIETSDSY*

>peptide 2 (30 aa)
TQVNSRGFLNPPVRYTRNTCRIIIENHHTC*

Sequence

>CNT30230643
AACCCAAGTTAATTCGCGAGGTTTTTTAAATCCACCTGTGAGATACACACGAAATACGTGCAGGATCATCATTGAGAACCATCATACTTGCTGACCACCG
ATGAACTGATCGGATTAACCAACCAAAGTTGGCCTCAGTCATTATGTATTGAACAGAGTAAAAAGCCTCTGTAACGGTTGGACGATAGTAAAAAGTCATA
GCAAAACCGTAGCTACTTGTACTAGAAAACAAGTAAGTGTGATCCCCCTAAACAATAAAATATGTTGACATGAGGAGGAACATATTTACTGTTATATCAT
CTGCAATCGCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTATTGAGATAGGTAACCCAATAGAACTCCCCCTCTGAGAACCGTATATGAGA
ATTTCATCTCGTACGGCTCAAGCGGAAACACACAAATACTGATTTCAACGGATATATAATAGAAAGTTCAAAACTTCATTATCCGCTTGATTCGATTTGC
CTCGAAGATACGAAGTAACAAAAATCCGGAATCTCTTCTTTGTGATGATAATGCCAAAAATATCAAGTTGGCTCATCTGTCTTTCTTTATGTTGATCGTT
ACAGGCCTCTTGAACCTTCTCTTCCCTATTTTTTATTTGTTATTTGATTTATTTTTTTTTTGTGCGTACTGCGGATTTACTCTTGTTTTACTATTGATAG
GAATTCTCTTGTTGAGACCCTATGAATCAATTGAAACCTCAGATTCATACTAGAAC