« Back to Oryza sativa search


Detailed information on CNT30694844


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318276Oryza sativaCorylus avellana21.047.4793.5177forward
CNT30549981Oryza sativaIpomoea triloba21.0416.0190.9177forward
CNT30500340Oryza sativaCoffea canephora21.046.6292.2177forward
CNT30187809Oryza sativaSecale cereale23.7713.7997.787forward
CNT30307634Oryza sativaTriticum aestivum21.0412.0593.5177forward
CNT30223926Oryza sativaHordeum vulgare23.7714.1297.787forward
CNT30449388Oryza sativaSaccharum spontaneum23.2216.5498.8285forward
CNT30132841Oryza sativaLolium perenne23.7716.7397.787forward
CNT3013205Oryza sativaZea mays23.229.3896.4785forward
CNT30207458Oryza sativaHelianthus annuus21.8614.3993.7580forward
CNT30626608Oryza sativaDaucus carota21.049.0692.2177forward
CNT30341799Oryza sativaEragrostis tef23.2218.8198.8285forward
CNT30355299Oryza sativaLactuca sativa21.5811.3791.1479forward
CNT3057178Oryza sativaAmborella trichopoda21.0413.3494.8177reverse complement
CNT30593653Oryza sativaEragrostis curvula23.2218.610085forward
CNT30556718Oryza sativaPanicum hallii23.2218.9798.8285forward
CNT30551345Oryza sativaOryza brachyantha31.1520.3692.98114forward
CNT30725701Oryza sativaLupinus angustifolius21.044.6793.5177forward
CNT3063959Oryza sativaSelaginella moellendorffii21.3112.391.0378forward
CNT3050740Oryza sativaCucumis sativus21.0411.6792.2177forward

Expression of CNT30694844

Peptides detected in this lncRNA

>peptide 1 (53 aa)
EPSRFFSRPWSSPSGRERKDRGERRAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30694844
CGAACCGAGCCGCTTCTTCTCCAGACCTTGGAGCTCGCCGTCAGGGAGGGAGAGGAAGGACAGAGGTGAGCGGCGCGCCGCCGCGATGAGGGCCAAGTGG
AAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAATCCCATAGGCGATCGACTGATGGAGGAGGAGAAAGCG
TCTTTGGCTCTCACTGCTGTCATCTCATCTATTTAAGTTGTTTAGTTTCCTTTAGTAAGAGAGAAAAAAAACTAATCAATGTACTTCTCTTGATCTTTGT
CATGGGAGTAATTGATTGTACTGGACAGCAATGTTTCCATAATTCTATTACCTGGAGTTATCTGTC