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Detailed information on CNT30538793


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533222Brassica napusEucalyptus grandis21.7625.8594.0584forward
CNT30318276Brassica napusCorylus avellana20.217.5793.5978forward
CNT30546743Brassica napusIpomoea triloba21.7616.9491.6784forward
CNT30514313Brassica napusJuglans regia21.522.1993.9883forward
CNT30376000Brassica napusArabidopsis thaliana24.0924.8791.493forward
CNT30500546Brassica napusCoffea canephora20.2116.8593.5978forward
CNT30616216Brassica napusSesamum indicum20.214.9393.5978forward
CNT30278460Brassica napusChenopodium quinoa21.513.3495.1883forward
CNT3021538Brassica napusCitrullus lanatus20.4713.8892.4179forward
CNT3070099Brassica napusQuercus suber21.514.993.9883forward
CNT30404042Brassica napusBeta vulgaris20.2116.2594.8778forward
CNT30524689Brassica napusPhaseolus vulgaris22.0218.6894.1285forward
CNT30628539Brassica napusVigna unguiculata21.7613.8295.2484forward
CNT30195551Brassica napusPisum sativum22.0216.4796.4785forward
CNT30494259Brassica napusOlea europaea20.7315.8793.7580forward
CNT30503976Brassica napusNicotiana attenuata20.4712.7896.279forward
CNT30708301Brassica napusGlycine max20.9812.595.0681forward
CNT3046844Brassica napusPrunus dulcis20.4715.5893.6779forward
CNT30566808Brassica napusActinidia chinensis21.512.2191.5783forward
CNT3085016Brassica napusVigna radiata21.7611.9895.2484forward
CNT30172851Brassica napusTrifolium pratense20.2112.9897.4478forward
CNT30313109Brassica napusCamelina sativa23.0618.2492.1389forward
CNT30260384Brassica napusBrassica rapa99.2234.3895.3383forward
CNT30611796Brassica napusArabis alpina24.8721.5291.6796forward
CNT30601041Brassica napusFraxinus excelsior20.4714.1694.9479forward
CNT30610456Brassica napusGossypium raimondii21.58.9293.9883forward
CNT30217757Brassica napusKalanchoe fedtschenkoi20.9820.293.8381forward
CNT30652772Brassica napusRosa chinensis20.2113.1193.5978forward
CNT30126894Brassica napusCorymbia citriodora19.9521.3394.8177forward
CNT30715353Brassica napusMalus domestica golden20.476.4396.279forward
CNT30625768Brassica napusDaucus carota20.4713.7692.4179forward
CNT30619768Brassica napusCajanus cajan20.4731.694.9479forward
CNT30355299Brassica napusLactuca sativa21.2411.893.982forward
CNT30153721Brassica napusPrunus persica20.4716.0294.9479forward
CNT30423745Brassica napusPapaver somniferum20.2116.2597.4478forward
CNT30704989Brassica napusPrunus avium21.7611.0495.2484forward
CNT3032717Brassica napusTheobroma cacao20.479.0493.6779forward
CNT3026341Brassica napusPopulus trichocarpa21.54.2393.9883forward
CNT30324349Brassica napusAsparagus officinalis20.4716.5392.4179forward
CNT30120571Brassica napusCitrus clementina21.56.9696.3983forward
CNT30604511Brassica napusOryza punctata20.2114.9793.5978forward
CNT30175235Brassica napusVigna angularis21.7613.2995.2484forward
CNT30724430Brassica napusLupinus angustifolius20.2112.2693.5978forward
CNT3050740Brassica napusCucumis sativus22.813.3389.7788forward
CNT30115234Brassica napusEutrema salsugineum23.8322.5595.6592forward

Expression of CNT30538793

Peptides detected in this lncRNA

>peptide 1 (59 aa)
IRALSNFKLGEVETLAIYSRETSETQLNIRARRFHDESQVEEEAHEEIEEEAQKDETEI*

>peptide 2 (33 aa)
MCRTCYLLTPFYYLQSRGLILGFYFIKFKCNTLT

Sequence

>CNT30538793
TATTAGGGCCTTGTCCAATTTTAAGCTAGGGGAAGTAGAAACCCTAGCTATATATAGTAGAGAGACGAGTGAAACTCAGCTGAACATCCGAGCTCGGCGA
TTTCACGATGAGAGCCAAGTGGAAGAAGAAGCGCATGAGGAGATTGAAGAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGTCTTTGTCTTGCTCT
ATCTTCTAATCTCTGGTGGTTGCTTTCTAGTTTCTTGAACCGTTTATGTTTTGTGTTTTTTACATTCAAGTTTTGAACAATCATGTGTAGAACATGTTAT
TTGCTTACTCCCTTTTATTATCTACAAAGCAGAGGTTTAATATTAGGCTTCTATTTTATAAAATTTAAGTGCAACACCCTAACTAT