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Detailed information on CNT30223410


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Hordeum vulgareOryza sativa48.0546.5487.84148forward
CNT30522047Hordeum vulgareSetaria italica45.4545.7587.14140forward
CNT30308216Hordeum vulgareTriticum aestivum85.0686.1891.98262forward
CNT30391813Hordeum vulgareTriticum turgidum98.796.8289.47304reverse complement
CNT30553207Hordeum vulgareOryza glaberrima97.0895.8383.28299forward
CNT30442760Hordeum vulgareAegilops tauschii87.6688.8292.22270forward
CNT30663261Hordeum vulgareTriticum dicoccoides87.6688.8291.85270forward
CNT3066721Hordeum vulgareLeersia perrieri41.5640.8992.19128forward
CNT30684136Hordeum vulgareTriticum urartu86.6977.3991.76267forward
CNT30361461Hordeum vulgareSorghum bicolor79.5579.5584.9245forward
CNT30596008Hordeum vulgareOryza meridionalis93.8393.5383.74289forward
CNT30369869Hordeum vulgareOryza glumipatula101.310083.65312forward
CNT30572433Hordeum vulgareVitis vinifera21.4311.9887.8866reverse complement
CNT30108933Hordeum vulgareOryza longistaminata42.8642.5889.39132forward
CNT30100969Hordeum vulgareOryza rufipogon88.6489.5184.62273forward
CNT30575474Hordeum vulgareOryza barthii97.495.8583300forward
CNT30115932Hordeum vulgareOryza nivara88.3189.4784.93272forward
CNT30603809Hordeum vulgareOryza punctata99.3599.6784.64306forward
CNT30550736Hordeum vulgareOryza brachyantha99.3599.3582.35306forward

Expression of CNT30223410

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MWGRLRWCGCLVWTVGLGLCCNIAGLPVPSW*

Sequence

>CNT30223410
TCGCTGAGCTCAGTCACGAGAGCTTGTAACCCATGTGGGGGCGTCTAAGGTGGTGTGGATGTTTGGTGTGGACTGTGGGCCTGGGCTTGTGTTGTAACAT
TGCCGGCCTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTGACCTGGGCGAAAGCTCCGGTCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTT
TCACAGAGCAGCGTTCACTGCCCGCTTCCAACGGTGGAAGGATAACAGACCGCTGCACCATGGGCCCGCTCTGGCACATGGTCCCTCTATAACAGACCAT
CATCTTTT