Detailed information on CNT30603809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Oryza punctataOryza sativa91.2197.2288.93280forward
CNT30521685Oryza punctataSetaria italica101.3100.9785.53311forward
CNT30185797Oryza punctataSecale cereale27.3634.5795.2484forward
CNT30308216Oryza punctataTriticum aestivum100.65101.6485.11309forward
CNT30223410Oryza punctataHordeum vulgare99.6799.3584.64306forward
CNT30391813Oryza punctataTriticum turgidum67.4365.9286.47207reverse complement
CNT30553207Oryza punctataOryza glaberrima101.6310092.31312forward
CNT30442760Oryza punctataAegilops tauschii99.35100.3385.57305forward
CNT30664085Oryza punctataTriticum dicoccoides46.2545.8192.25142forward
CNT30445279Oryza punctataSaccharum spontaneum23.4512.3395.8372reverse complement
CNT30130870Oryza punctataLolium perenne23.7831.8893.1573forward
CNT3015504Oryza punctataZea mays36.8118.6892.04113forward
CNT3066721Oryza punctataLeersia perrieri100.9899.0484.52310forward
CNT30684136Oryza punctataTriticum urartu100.9889.8684.52310forward
CNT30339268Oryza punctataEragrostis tef49.5151.8885.53152forward
CNT30361461Oryza punctataSorghum bicolor100.98100.6586.13310forward
CNT30596008Oryza punctataOryza meridionalis100.98100.3292.9310forward
CNT30369869Oryza punctataOryza glumipatula101.95100.3292.01313forward
CNT30108933Oryza punctataOryza longistaminata100.9810087.74310forward
CNT30150266Oryza punctataBrachypodium distachyon26.3826.5696.381forward
CNT30100969Oryza punctataOryza rufipogon92.1892.7992.23283forward
CNT30575474Oryza punctataOryza barthii101.9510092.01313forward
CNT30115932Oryza punctataOryza nivara91.8692.7692.91282forward
CNT30550736Oryza punctataOryza brachyantha100.65100.3288.03309forward

Expression of CNT30603809

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSVARACNPSGGIRWCGCSVRNLVLGSCV*

Sequence

>CNT30603809
GCCGAGCTCAGTAGCGAGAGCTTGTAACCCAAGTGGGGGCATCAGATGGTGTGGATGTTCGGTGCGGAATTTGGTCCTGGGTTCATGTGTGTAACTATGC
TGGCTTGCCCGTTCCAAGTTGAGTAGTGGACGGGAGCGCCTTCGGCGAAGGCCTTGGTCTCTCCGGCCCTGAAGTGGCAGGCACGGCGTGAGGCTGGCTT
CACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATGGGCCCGCTTCTGGCCCAGAGTCCCACCATAACAGACCAC
CATCTTT