Detailed information on CNT30690183


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521685Oryza sativaSetaria italica44.3445.7890.78141forward
CNT30190201Oryza sativaSecale cereale29.2530.993.5593reverse complement
CNT30223410Oryza sativaHordeum vulgare46.5448.0587.84148forward
CNT30391813Oryza sativaTriticum turgidum45.646.1888.28145reverse complement
CNT30552322Oryza sativaOryza glaberrima100.31102.2496.55319forward
CNT30439638Oryza sativaAegilops tauschii42.7744.5988.24136forward
CNT3066721Oryza sativaLeersia perrieri42.4543.1391.85135forward
CNT30623316Oryza sativaDaucus carota25.7926.9787.882forward
CNT30689289Oryza sativaTriticum urartu26.4220.5994.0584forward
CNT30361461Oryza sativaSorghum bicolor44.3445.7890.07141forward
CNT30369487Oryza sativaOryza glumipatula101.26107.6989.13322forward
CNT30108933Oryza sativaOryza longistaminata100.31102.992.16319forward
CNT3099765Oryza sativaOryza rufipogon100.31100.3198.75319forward
CNT30574593Oryza sativaOryza barthii100.31102.2496.55319forward
CNT30115823Oryza sativaOryza nivara10010099.37318forward
CNT30550736Oryza sativaOryza brachyantha65.0967.2188.89207forward

Expression of CNT30690183

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PSSVARACNPSGGTKGGCGCLVWILILGPMLL*

Sequence

>CNT30690183
GCCGAGCTCAGTAGCGAGAGCCTGTAACCCAAGCGGGGGCACTAAAGGTGGCTGCGGATGTTTGGTGTGGATTCTGATCCTGGGCCCCATGTTGTTGTAA
TCTTGCTGGCTTGCCCGTTCCAAGTTGCGTAGTGGGCCGGAGGGGCTTTGGCGAAGGCCTTTGCTTTGCTTCTCCGGCCCTAAAGTGGCAGGCACAGCGT
GAGGCTGGCTTCACAGAGCAGCGATCACTGCCCGCTTCCATCGGTGGAAGGATAACAGGCTGCTGCACCTTGGGCCCGCTTCTGGCCCAGAGTCCCTCTA
CAACAGACCACCATCTTT