Detailed information on CNT30442760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Aegilops tauschiiOryza sativa42.7645.1489.23130forward
CNT30522047Aegilops tauschiiSetaria italica81.2580.7281.78247forward
CNT30308216Aegilops tauschiiTriticum aestivum97.797.799.33297forward
CNT30223410Aegilops tauschiiHordeum vulgare88.8287.6692.22270forward
CNT30391813Aegilops tauschiiTriticum turgidum98.6895.5490300reverse complement
CNT30553207Aegilops tauschiiOryza glaberrima89.4787.1884.56272forward
CNT30663261Aegilops tauschiiTriticum dicoccoides10010094.41304forward
CNT30130300Aegilops tauschiiLolium perenne21.7122.8496.9766reverse complement
CNT3015504Aegilops tauschiiZea mays84.5442.4885.21257forward
CNT30684136Aegilops tauschiiTriticum urartu87.8377.3993.63267forward
CNT30361461Aegilops tauschiiSorghum bicolor86.5185.3985.17263forward
CNT30596008Aegilops tauschiiOryza meridionalis88.4987.0685.13269forward
CNT30369785Aegilops tauschiiOryza glumipatula89.87084.62273reverse complement
CNT30100969Aegilops tauschiiOryza rufipogon89.4789.1886.03272forward
CNT30574593Aegilops tauschiiOryza barthii67.7666.0384.95206forward
CNT30115932Aegilops tauschiiOryza nivara89.1489.1485.98271forward
CNT30603809Aegilops tauschiiOryza punctata100.3399.3585.57305forward
CNT30550736Aegilops tauschiiOryza brachyantha87.8386.6984.64267forward

Expression of CNT30442760

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSVTRACDPCGGIKVVWMFGADSRPGPVV*

>peptide 2 (81 aa)
MWGHQGGVDVWCGFSAWACGVTLPACPFQVGSGLGGLGESLGLSGPEAAGTTLGWFHRAAFTARFQRWKDNWPLHHGPTLA*

>peptide 3 (40 aa)
RAQSRELVTHVGASRWCGCLVRILGLGLWCDFAGLPVPSW*

Sequence

>CNT30442760
GCCGAGCTCAGTCACGAGAGCTTGTGACCCATGTGGGGGCATCAAGGTGGTGTGGATGTTTGGTGCGGATTCTCGGCCTGGGCCTGTGGTGTGACTTTGC
CGGCTTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTGGCTTGGGCGAAAGCCTCGGCCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTTTCA
CAGAGCAGCGTTTACTGCCCGCTTCCAACGGTGGAAGGATAACTGGCCGCTGCACCATGGGCCCACTCTGGCCTAGGGTCCCTACATGACAGACCACCAT
TTTT