Detailed information on CNT30522047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526655Setaria italicaPhaseolus vulgaris21.2429.9589.2365forward
CNT30308216Setaria italicaTriticum aestivum80.7281.2581.78247forward
CNT30223410Setaria italicaHordeum vulgare45.7545.4587.14140forward
CNT30391813Setaria italicaTriticum turgidum55.5654.1484.71170reverse complement
CNT30442760Setaria italicaAegilops tauschii80.7281.2581.78247forward
CNT30663261Setaria italicaTriticum dicoccoides80.7281.2583.4247forward
CNT30684136Setaria italicaTriticum urartu80.7271.5982.59247forward
CNT30150266Setaria italicaBrachypodium distachyon25.4925.5794.8778forward

Expression of CNT30522047

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LSSVARACNPSGGIKVVWMFSADSGFESVVCSCWPCPFQVGSGLCSPGESLGFIGPEVAGTA*

Sequence

>CNT30522047
GCTGAGCTCGGTTGCGCGGGCTTGTAACCCAAGTGGGGGCATTAAAGTGGTGTGGATGTTTAGTGCGGACTCTGGGTTTGAGTCTGTGGTGTGCTCTTGC
TGGCCCTGCCCGTTCCAAGTTGGTAGTGGCCTATGCAGCCCAGGCGAAAGCTTGGGCTTTATTGGACCTGAAGTGGCAGGAACGGCGTGAGGCTGGTTTC
ACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATGACAGGCCGCTACATCACGGGCCCAATACAGGCTCAGGGTCCCTCTACAACAGACCATC
ATCTTT