Detailed information on CNT30361461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Sorghum bicolorOryza sativa45.7844.3490.07141forward
CNT30521685Sorghum bicolorSetaria italica101.3101.385.58312forward
CNT30308216Sorghum bicolorTriticum aestivum85.3986.5184.79263forward
CNT30223410Sorghum bicolorHordeum vulgare79.5579.5584.9245forward
CNT30391813Sorghum bicolorTriticum turgidum79.2277.7184.84244reverse complement
CNT30553207Sorghum bicolorOryza glaberrima101.95100.6482.8314forward
CNT30442760Sorghum bicolorAegilops tauschii85.3986.5185.17263forward
CNT30663261Sorghum bicolorTriticum dicoccoides85.7186.8485.23264forward
CNT30130870Sorghum bicolorLolium perenne26.9536.2491.5783forward
CNT3066721Sorghum bicolorLeersia perrieri44.1643.4589.71136forward
CNT30684136Sorghum bicolorTriticum urartu85.3976.2385.93263forward
CNT30596008Sorghum bicolorOryza meridionalis101.62101.2984.98313forward
CNT30369869Sorghum bicolorOryza glumipatula43.5142.9591.79134forward
CNT30108933Sorghum bicolorOryza longistaminata45.7845.4889.36141forward
CNT3099765Sorghum bicolorOryza rufipogon45.7844.3489.36141forward
CNT30575474Sorghum bicolorOryza barthii43.8343.1390.37135forward
CNT30115823Sorghum bicolorOryza nivara45.7844.3490.07141forward
CNT30603809Sorghum bicolorOryza punctata100.65100.9886.13310forward
CNT30550736Sorghum bicolorOryza brachyantha100.65100.6585.16310forward

Expression of CNT30361461

Peptides detected in this lncRNA

>peptide 1 (56 aa)
PSSVAWACNPSGGIKVVWMFGAESGPGLLMCLGWPARSKLVVASGDLGGSSWPPWT*

Sequence

>CNT30361461
GCCGAGCTCAGTTGCGTGGGCTTGTAACCCAAGTGGGGGCATCAAGGTGGTGTGGATGTTTGGTGCGGAATCTGGGCCTGGGCTCTTGATGTGCCTTGGC
TGGCCTGCCCGTTCCAAGTTGGTTGTGGCCAGCGGAGACTTGGGCGGAAGCTCTTGGCCTCCCTGGACCTAAAGTGGCAGGAACGGCGTGAGGCTGGTTT
CACAGAGCAGCGATCACTGTCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCATCATGGGTCCCGCTTCAGGCCCAGACTCCTACTATAACAGACCA
CCATCTTT