Detailed information on CNT30108933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Oryza longistaminataOryza sativa102.9100.3192.16319forward
CNT30521685Oryza longistaminataSetaria italica45.4845.7890.07141forward
CNT30526649Oryza longistaminataPhaseolus vulgaris28.3928.9587.588forward
CNT30708521Oryza longistaminataGlycine max25.1625.6688.4678forward
CNT30295276Oryza longistaminataTriticum aestivum43.5545.9290.37135forward
CNT30223410Oryza longistaminataHordeum vulgare42.5842.8689.39132forward
CNT30391813Oryza longistaminataTriticum turgidum35.4835.0390.91110reverse complement
CNT30552322Oryza longistaminataOryza glaberrima101.29100.6492.36314forward
CNT30439638Oryza longistaminataAegilops tauschii43.5544.2689.63135forward
CNT30664085Oryza longistaminataTriticum dicoccoides31.2931.2993.8197forward
CNT30445279Oryza longistaminataSaccharum spontaneum49.3526.286.93153reverse complement
CNT3015504Oryza longistaminataZea mays26.1313.3995.0681forward
CNT3066721Oryza longistaminataLeersia perrieri41.2940.8992.19128forward
CNT30339268Oryza longistaminataEragrostis tef49.0351.8887.5152forward
CNT30361461Oryza longistaminataSorghum bicolor45.4845.7889.36141forward
CNT30596008Oryza longistaminataOryza meridionalis100.97101.2985.62313forward
CNT30369487Oryza longistaminataOryza glumipatula102.26106.0286.44317forward
CNT3099765Oryza longistaminataOryza rufipogon102.9100.3191.54319forward
CNT30574593Oryza longistaminataOryza barthii101.29100.6492.36314forward
CNT30115823Oryza longistaminataOryza nivara102.9100.3191.85319forward
CNT30603809Oryza longistaminataOryza punctata100100.9887.74310forward
CNT30550736Oryza longistaminataOryza brachyantha100.32100.9784.89311forward

Expression of CNT30108933

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRMLGVYSDPGPMCVIFAGLPVPSSVVGRRGFG*

Sequence

>CNT30108933
GCCGAGCTCGGTAGCGAGAGCCTGTAACCCAAGCGGGGGCATTAAGGTGGATGCGGATGTTGGGTGTGTACTCTGATCCTGGGCCCATGTGTGTAATCTT
TGCTGGCTTGCCCGTTCCAAGTAGCGTAGTGGGCCGGAGGGGCTTTGGCTAAGGCCTTCGCTTCTCCGGCCCTAGAGTGGCAGGCACAGCGTGAGGCTGG
CTTCACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCTGCTGCACCATGGGCCCGCTTCTGGCTCGGAGTCCCTCTACAACAGAC
CACCATCTTT