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Detailed information on CNT30596008


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Oryza meridionalisOryza sativa90.9497.5789.32281forward
CNT30521685Oryza meridionalisSetaria italica98.3898.784.87304forward
CNT30185797Oryza meridionalisSecale cereale27.5134.9894.1285forward
CNT30308216Oryza meridionalisTriticum aestivum87.0688.4984.76269forward
CNT30223410Oryza meridionalisHordeum vulgare93.5393.8383.74289forward
CNT30391813Oryza meridionalisTriticum turgidum65.764.6585.22203reverse complement
CNT30553207Oryza meridionalisOryza glaberrima101.94100.9691.43315forward
CNT30442760Oryza meridionalisAegilops tauschii87.0688.4985.13269forward
CNT30664085Oryza meridionalisTriticum dicoccoides56.3156.1386.21174forward
CNT30445279Oryza meridionalisSaccharum spontaneum23.312.3395.8372reverse complement
CNT30130870Oryza meridionalisLolium perenne23.6231.8893.1573forward
CNT3015504Oryza meridionalisZea mays84.1442.9884.23260forward
CNT3066721Oryza meridionalisLeersia perrieri99.3598.0883.71307forward
CNT30684136Oryza meridionalisTriticum urartu87.3878.2684.07270forward
CNT30361461Oryza meridionalisSorghum bicolor101.29101.6284.98313forward
CNT30369869Oryza meridionalisOryza glumipatula102.27101.2891.77316forward
CNT30108933Oryza meridionalisOryza longistaminata101.29100.9785.62313forward
CNT30100969Oryza meridionalisOryza rufipogon91.9193.1193.31284forward
CNT30575474Oryza meridionalisOryza barthii101.94100.6491.75315forward
CNT30115932Oryza meridionalisOryza nivara91.5993.0993.99283forward
CNT30603809Oryza meridionalisOryza punctata100.32100.9892.9310forward
CNT30550736Oryza meridionalisOryza brachyantha100.65100.9786.82311forward

Expression of CNT30596008

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSLARACNPRGGIRWCGCLVQNLGLGPCV*

Sequence

>CNT30596008
GCCGAGCTCACTAGCGAGAGCTTGTAACCCAAGAGGGGGCATCAGGTGGTGTGGATGTTTGGTGCAGAATTTGGGCCTGGGTCCATGCGTGTAACTATGC
TGGCTTGCCCGTTCCAAGTTGAGTAGTGGGTGGAGGGGCTTCGGCGAAAGCCTTGGTCTCTCTGGCCCTGAAGTTGTGACAGGCACGGCGTGAGGCTGGC
TTCACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATAGGCCCGCTTCTGGCCCAGAGTCCCACTATAACAGACC
CACCATCTT