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Detailed information on CNT30115932


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Oryza nivaraOryza sativa99.01104.5194.35301forward
CNT30521685Oryza nivaraSetaria italica91.4590.2685.25278forward
CNT30308216Oryza nivaraTriticum aestivum89.1489.1485.61271forward
CNT30223410Oryza nivaraHordeum vulgare89.4788.3184.93272forward
CNT30391813Oryza nivaraTriticum turgidum56.5854.7887.79172reverse complement
CNT30553207Oryza nivaraOryza glaberrima103.62100.9693.33315forward
CNT30442760Oryza nivaraAegilops tauschii89.1489.1485.98271forward
CNT30663261Oryza nivaraTriticum dicoccoides89.1489.1484.5271forward
CNT3015504Oryza nivaraZea mays49.6724.9688.08151forward
CNT30684136Oryza nivaraTriticum urartu89.1478.5585.24271forward
CNT30368288Oryza nivaraSorghum bicolor2519.2998.6876forward
CNT30596008Oryza nivaraOryza meridionalis93.0991.5993.99283forward
CNT30369869Oryza nivaraOryza glumipatula103.95101.2893.67316forward
CNT30100969Oryza nivaraOryza rufipogon100.99100.6698.05307forward
CNT30575474Oryza nivaraOryza barthii103.62100.6493.65315forward
CNT30603809Oryza nivaraOryza punctata92.7691.8692.91282forward
CNT30550736Oryza nivaraOryza brachyantha93.0991.8887.63283forward

Expression of CNT30115932

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MWGHQVVWMIGAEFGPGGPCVVNYAGLPVPS*

Sequence

>CNT30115932
GCCGAGCTCAGTAGCGAGAGCTTGTAACCCATGTGGGGGCATCAGGTGGTGTGGATGATTGGTGCTGAATTTGGGCCTGGGGGTCCATGTGTTGTTAACT
ATGCTGGCTTGCCCGTTCCAAGTTGAGTAGTGGGTGGAGGGGCTTCGGCGAAAGCCTTGGTCTCTCCGGCCCTGAAGTTGGCAGACACGGCGTGAGGCTG
GCTTCACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATGGGCCCGCTTCTGGCCCCACTATTACAGACCACCAT
CTTT