Detailed information on CNT3066721


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Leersia perrieriOryza sativa43.1342.4591.85135forward
CNT30521685Leersia perrieriSetaria italica55.9156.8288175forward
CNT30297476Leersia perrieriTriticum aestivum40.8941.9790.62128forward
CNT30223410Leersia perrieriHordeum vulgare40.8941.5692.19128forward
CNT30391813Leersia perrieriTriticum turgidum37.3837.2692.31117reverse complement
CNT30552322Leersia perrieriOryza glaberrima65.565.7185.85205forward
CNT30439638Leersia perrieriAegilops tauschii40.8941.9790.62128forward
CNT30664085Leersia perrieriTriticum dicoccoides30.0330.3294.6894forward
CNT3015504Leersia perrieriZea mays27.1614.0595.2985forward
CNT30623316Leersia perrieriDaucus carota25.8826.6486.4281forward
CNT30684136Leersia perrieriTriticum urartu25.5623.1997.580forward
CNT30361461Leersia perrieriSorghum bicolor43.4544.1689.71136forward
CNT30596008Leersia perrieriOryza meridionalis98.0899.3583.71307forward
CNT30369869Leersia perrieriOryza glumipatula40.8941.0391.41128forward
CNT30108933Leersia perrieriOryza longistaminata40.8941.2992.19128forward
CNT3099765Leersia perrieriOryza rufipogon43.1342.4591.11135forward
CNT30574593Leersia perrieriOryza barthii65.565.7185.85205forward
CNT30115823Leersia perrieriOryza nivara43.1342.4591.85135forward
CNT30603809Leersia perrieriOryza punctata99.04100.9884.52310forward
CNT30550736Leersia perrieriOryza brachyantha99.04100.6585.48310forward

Expression of CNT3066721

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVWGGIWALGSCVELFWPARSKLRSGWRSLSESIGLSGLLKRQA*

Sequence

>CNT3066721
GCCGAGCTCAGTAGCAGGAGCTTGTAACCCAAGCTGGGGGCATTAAGGGTGGTGCGAATGGTTTGGGGCGGAATATGGGCTTTGGGCTCATGTGTGGAAC
TTTTCTGGCCTGCCCGTTCCAAGTTGCGTAGTGGTTGGAGGAGTCTTAGCGAAAGCATTGGCCTCTCTGGGCTTCTAAAGCGGCAGGCATAGCGTTAGGC
TGGTTTCACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATGGGCCCGCTTCTGGTCCATATTCCCTCTATAACA
GACCACCATTTTT