Detailed information on CNT30391813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Triticum turgidumOryza sativa46.1845.688.28145reverse complement
CNT30522047Triticum turgidumSetaria italica54.1455.5684.71170reverse complement
CNT30297669Triticum turgidumTriticum aestivum96.599.0290.43303reverse complement
CNT30223410Triticum turgidumHordeum vulgare96.8298.789.47304reverse complement
CNT30552322Triticum turgidumOryza glaberrima68.1568.5985.98214reverse complement
CNT30442760Triticum turgidumAegilops tauschii95.5498.6890300reverse complement
CNT30663261Triticum turgidumTriticum dicoccoides95.5498.6890.67300reverse complement
CNT30130300Triticum turgidumLolium perenne21.0222.8495.4566forward
CNT3015504Triticum turgidumZea mays49.0425.4586.36154reverse complement
CNT3066721Triticum turgidumLeersia perrieri37.2637.3892.31117reverse complement
CNT30684136Triticum turgidumTriticum urartu99.0490.1496.14311reverse complement
CNT30361461Triticum turgidumSorghum bicolor77.7179.2284.84244reverse complement
CNT30596008Triticum turgidumOryza meridionalis64.6565.785.22203reverse complement
CNT30369785Triticum turgidumOryza glumipatula30.2524.3692.6395forward
CNT30572433Triticum turgidumVitis vinifera21.0211.9887.8866forward
CNT30108933Triticum turgidumOryza longistaminata35.0335.4890.91110reverse complement
CNT30100969Triticum turgidumOryza rufipogon54.7856.3987.21172reverse complement
CNT30574593Triticum turgidumOryza barthii68.1568.5985.98214reverse complement
CNT30115932Triticum turgidumOryza nivara54.7856.5887.79172reverse complement
CNT30603809Triticum turgidumOryza punctata65.9267.4386.47207reverse complement
CNT30550736Triticum turgidumOryza brachyantha91.0892.8682.87286reverse complement

Expression of CNT30391813

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVVCYRGVLGQSGPMLQRPVILPPLEAGSERCSVKPA*

Sequence

>CNT30391813
GATGGTGGTCTGTTATAGAGGGGTCCTAGGCCAGAGCGGGCCCATGCTGCAGCGGCCTGTTATCCTTCCACCGTTGGAAGCGGGCAGTGAACGCTGCTCT
GTGAAACCAGCCTAACGTGGTGCCTGCCACTTAAGGGCCTGAGAGGCCGAAGCTTTCGCCCCAGCCACCCAGCCCACTACCAACTTGGAACGGGCAGGCC
AGCAAGGTTACATCATAAGCCCAGGCCAACAAACCGCACCAAGCATCCACACCGCCTCAATGCCCCCACATGGGTGACAAGCTCCCGTGACCGAGCTCGG
CGATGCTAGCGCTG