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Detailed information on CNT30308216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522047Triticum aestivumSetaria italica81.2580.7281.78247forward
CNT30223410Triticum aestivumHordeum vulgare86.1885.0691.98262forward
CNT30553207Triticum aestivumOryza glaberrima89.4787.1884.19272forward
CNT30442760Triticum aestivumAegilops tauschii97.797.799.33297forward
CNT30130300Triticum aestivumLolium perenne21.7122.8496.9766reverse complement
CNT3015504Triticum aestivumZea mays84.5442.4884.82257forward
CNT30361461Triticum aestivumSorghum bicolor86.5185.3984.79263forward
CNT30596008Triticum aestivumOryza meridionalis88.4987.0684.76269forward
CNT30369785Triticum aestivumOryza glumipatula89.87084.25273reverse complement
CNT30100969Triticum aestivumOryza rufipogon89.4789.1885.66272forward
CNT30574593Triticum aestivumOryza barthii69.0867.3184.29210forward
CNT30115932Triticum aestivumOryza nivara89.1489.1485.61271forward
CNT30603809Triticum aestivumOryza punctata101.64100.6585.11309forward
CNT30550736Triticum aestivumOryza brachyantha87.8386.6984.27267forward

Expression of CNT30308216

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MWGHQGGVDVWCGFSAWACGVTLPACPFQVGSGLGCLGESLGLSGPEAAGTTLGWFHRAAFTARFQRWKDNWPLHHGPILA*

>peptide 2 (30 aa)
PSSVTRACDPCGGIKVVWMFGADSRPGPVV*

>peptide 3 (40 aa)
RAQSRELVTHVGASRWCGCLVRILGLGLWCDFAGLPVPSW*

Sequence

>CNT30308216
GCCGAGCTCAGTCACGAGAGCTTGTGACCCATGTGGGGGCATCAAGGTGGTGTGGATGTTTGGTGCGGATTCTCGGCCTGGGCCTGTGGTGTGACTTTGC
CGGCTTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTTGCTTGGGCGAAAGCCTCGGCCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTTTCA
CAGAGCAGCGTTTACTGCCCGCTTCCAACGGTGGAAGGATAACTGGCCGCTGCACCATGGGCCCATTCTGGCCTAGGGTCCCTACATGACAGACCACTAT
CTTT