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Detailed information on CNT30553207


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Oryza glaberrimaOryza sativa99.36107.6489.03310forward
CNT30521685Oryza glaberrimaSetaria italica100.96102.2783.49315forward
CNT30379183Oryza glaberrimaManihot esculenta18.9120.7789.8359reverse complement
CNT30308216Oryza glaberrimaTriticum aestivum87.1889.4784.19272forward
CNT30223410Oryza glaberrimaHordeum vulgare95.8397.0883.28299forward
CNT30442760Oryza glaberrimaAegilops tauschii87.1889.4784.56272forward
CNT30664085Oryza glaberrimaTriticum dicoccoides45.8346.1389.51143forward
CNT3015504Oryza glaberrimaZea mays28.8514.8893.3390forward
CNT30684136Oryza glaberrimaTriticum urartu87.1878.8483.82272forward
CNT30361461Oryza glaberrimaSorghum bicolor100.64101.9582.8314forward
CNT30596008Oryza glaberrimaOryza meridionalis100.96101.9491.43315forward
CNT30369869Oryza glaberrimaOryza glumipatula100.96100.9697.14315forward
CNT30100969Oryza glaberrimaOryza rufipogon100.96103.2892.7315forward
CNT30575474Oryza glaberrimaOryza barthii100.3210099.68313forward
CNT30115932Oryza glaberrimaOryza nivara100.96103.6293.33315forward
CNT30603809Oryza glaberrimaOryza punctata100101.6392.31312forward
CNT30550736Oryza glaberrimaOryza brachyantha100.32101.6287.54313forward

Expression of CNT30553207

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MWGHQVVWMVGAEFGLGFMLLLTMLACPFQVE*

>peptide 2 (31 aa)
PSSVVRACNPCGGIRWCGWLVLNLGLGSCCC*

Sequence

>CNT30553207
GCCGAGCTCAGTAGTGAGAGCTTGTAACCCATGTGGGGGCATCAGGTGGTGTGGATGGTTGGTGCTGAATTTGGGCTTGGGTTCATGTTGTTGTTAACTA
TGCTGGCTTGCCCGTTCCAAGTTGAGTAGTGGGTGGGAGGGGCTTCGGCGAAAGCCTTGGGTCTCTCCGGCCCTGAAGTGGCAGGCACGGCGTGAGGCTG
GCTTCACAGAGCAGCGATCACTGCTCGCTTCCAACTGTGGAAGGATAAACAGGCCGCTGCACCATGGGCCCGCTTCTGGCCCAGAGTTCCACTATTACAG
ACCACCATCTTT