Detailed information on CNT30575474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Oryza barthiiOryza sativa99.04107.6489.35310forward
CNT30379183Oryza barthiiManihot esculenta18.8520.7789.8359reverse complement
CNT30223410Oryza barthiiHordeum vulgare95.8597.483300forward
CNT30553207Oryza barthiiOryza glaberrima100100.3299.68313forward
CNT3015504Oryza barthiiZea mays26.213.5593.982forward
CNT30361461Oryza barthiiSorghum bicolor43.1343.8390.37135forward
CNT30596008Oryza barthiiOryza meridionalis100.64101.9491.75315forward
CNT30369869Oryza barthiiOryza glumipatula100.96101.2896.84316forward
CNT30100969Oryza barthiiOryza rufipogon100.64103.2893.02315forward
CNT30115932Oryza barthiiOryza nivara100.64103.6293.65315forward
CNT30603809Oryza barthiiOryza punctata100101.9592.01313forward
CNT30550736Oryza barthiiOryza brachyantha100.32101.9587.26314forward

Expression of CNT30575474

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MWGHQVVWMVGAEFGLGFMLLLTMLACPFQVE*

>peptide 2 (31 aa)
PSSVVRACNPCGGIRWCGWLVLNLGLGSCCC*

Sequence

>CNT30575474
GCCGAGCTCAGTAGTGAGAGCTTGTAACCCATGTGGGGGCATCAGGTGGTGTGGATGGTTGGTGCTGAATTTGGGCTTGGGTTCATGTTGTTGTTAACTA
TGCTGGCTTGCCCGTTCCAAGTTGAGTAGTGGGTGGGAGGGGCTTCGGCGAAAGCCTTGGGTCTCTCCGGCCCTGAAGTTGGCAGGCACGGCGTGAGGCT
GGCTTCACAGAGCAGCGATCACTGCTCGCTTCCAACTGTGGAAGGATAAACAGGCCGCTGCACCATGGGCCCGCTTCTGGCCCAGAGTTCCACTATTACA
GACCACCATCTTT