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Detailed information on CNT30663261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522047Triticum dicoccoidesSetaria italica81.2580.7283.4247forward
CNT30297669Triticum dicoccoidesTriticum aestivum99.3498.6993.71302forward
CNT30223410Triticum dicoccoidesHordeum vulgare88.8287.6691.85270forward
CNT30391813Triticum dicoccoidesTriticum turgidum98.6895.5490.67300reverse complement
CNT30442760Triticum dicoccoidesAegilops tauschii10010094.41304forward
CNT3015504Triticum dicoccoidesZea mays84.8742.6484.5258forward
CNT30684136Triticum dicoccoidesTriticum urartu95.3984.0692.41290forward
CNT30361461Triticum dicoccoidesSorghum bicolor86.8485.7185.23264forward
CNT30115932Triticum dicoccoidesOryza nivara89.1489.1484.5271forward
CNT30550736Triticum dicoccoidesOryza brachyantha84.2183.1282.42256forward

Expression of CNT30663261

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSVTRACHPRGGIKVVWMFGADSGPGPVL*

>peptide 2 (40 aa)
RAQSRELVTHVGASRWCGCLVRTLGLGLCCDLVGLPVPSW*

>peptide 3 (91 aa)
AELSHESLSPTWGHQGGVDVWCGLWAWACVVTLSACPFQVGSGLGGWGESFGLSGPEAAGTTLGWFHRAAFTARFQRWKDDRPLHHGPTLA*

Sequence

>CNT30663261
GCCGAGCTCAGTCACGAGAGCTTGTCACCCACGTGGGGGCATCAAGGTGGTGTGGATGTTTGGTGCGGACTCTGGGCCTGGGCCTGTGTTGTGACCTTGT
CGGCTTGCCCGTTCCAAGTTGGTAGTGGGCTGGGTGGCTGGGGCGAAAGTTTCGGCCTCTCAGGCCCTGAAGCGGCAGGCACCACGTTAGGCTGGTTTCA
CAGAGCAGCGTTTACTGCCCGCTTCCAACGGTGGAAGGATGACAGGCCGCTGCATCATGGGCCCACTCTGGCCTAGGGCCCCTCCATAACAAACCACCAT
TTTT