| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30692506 | Oryza rufipogon | Oryza sativa | 99.02 | 104.86 | 93.71 | 302 | forward |
| CNT30521685 | Oryza rufipogon | Setaria italica | 91.48 | 90.58 | 84.95 | 279 | forward |
| CNT30308216 | Oryza rufipogon | Triticum aestivum | 89.18 | 89.47 | 85.66 | 272 | forward |
| CNT30223410 | Oryza rufipogon | Hordeum vulgare | 89.51 | 88.64 | 84.62 | 273 | forward |
| CNT30391813 | Oryza rufipogon | Triticum turgidum | 56.39 | 54.78 | 87.21 | 172 | reverse complement |
| CNT30553207 | Oryza rufipogon | Oryza glaberrima | 103.28 | 100.96 | 92.7 | 315 | forward |
| CNT30442760 | Oryza rufipogon | Aegilops tauschii | 89.18 | 89.47 | 86.03 | 272 | forward |
| CNT30664085 | Oryza rufipogon | Triticum dicoccoides | 90.82 | 89.35 | 83.75 | 277 | forward |
| CNT3015504 | Oryza rufipogon | Zea mays | 49.51 | 24.96 | 87.42 | 151 | forward |
| CNT30684136 | Oryza rufipogon | Triticum urartu | 89.18 | 78.84 | 84.93 | 272 | forward |
| CNT30368288 | Oryza rufipogon | Sorghum bicolor | 24.92 | 19.29 | 97.37 | 76 | forward |
| CNT30596008 | Oryza rufipogon | Oryza meridionalis | 93.11 | 91.91 | 93.31 | 284 | forward |
| CNT30369869 | Oryza rufipogon | Oryza glumipatula | 103.61 | 101.28 | 93.67 | 316 | forward |
| CNT30575474 | Oryza rufipogon | Oryza barthii | 103.28 | 100.64 | 93.02 | 315 | forward |
| CNT30115932 | Oryza rufipogon | Oryza nivara | 100.66 | 100.99 | 98.05 | 307 | forward |
| CNT30603809 | Oryza rufipogon | Oryza punctata | 92.79 | 92.18 | 92.23 | 283 | forward |
| CNT30550736 | Oryza rufipogon | Oryza brachyantha | 93.11 | 92.21 | 86.97 | 284 | forward |
>CNT30100969
GCCGAGCTCAGTAGCGAGAGCTTGTAACCCATGTGGGGGCATCAGGTGGTGTGGATGATTGGTGCTGAATTTTGGGCCTGGGTCCATGTGTTGTGTTAAC
TATGCTGGCTTGCCCGTTCCAAGTTGAGTAGTGGGTGGAGGGGCTTCGGCGAAAGCCTTGGTCTCTCCGGCCCTGAAGTTGGCAGACACGGCGTGAGGCT
GGCTTCACAGAGCAGCGATCACTGCCCGCTTCCAACGGTGGAAGGATAATAGGCCGCTGCACCATGGGCCCGCTTCTGGCCCCACTATTACAGACCACCA
TCTTT