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Detailed information on CNT30295130


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L590|BIP3_ORYSJ, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Triticum aestivumOryza sativa9.648.286.92107reverse complement
CNT30520761Triticum aestivumSetaria italica9.7842.2588.07109reverse complement
CNT30640495Triticum aestivumNymphaea colorata7.7121.2386.0586reverse complement
CNT30224773Triticum aestivumHordeum vulgare9.0641.2291.09101reverse complement
CNT30395728Triticum aestivumTriticum turgidum10.1325.2291.15113reverse complement
CNT30568742Triticum aestivumActinidia chinensis7.6239.3583.5385reverse complement
CNT30552909Triticum aestivumOryza glaberrima9.0636.7387.13101reverse complement
CNT30665093Triticum aestivumTriticum dicoccoides9.9635.2491.89111reverse complement
CNT30449535Triticum aestivumSaccharum spontaneum9.7826.4688.99109reverse complement
CNT30143339Triticum aestivumLolium perenne9.9629.5290.99111reverse complement
CNT30685689Triticum aestivumTriticum urartu9.0639.1591.09101reverse complement
CNT30367474Triticum aestivumSorghum bicolor9.7838.3888.99109reverse complement
CNT30369751Triticum aestivumOryza glumipatula9.9645.4987.39111reverse complement
CNT30115466Triticum aestivumOryza nivara9.0636.4688.12101reverse complement

Expression of CNT30295130

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MAGGRNMQGACDCSGQRKARGARRWRVVQPGTAPAGTTLPGRDSGSQHRRPNWIHRTQARPPTCMQF*

>peptide 2 (32 aa)
LSPFSLHPSRRLLFHREEHSSPRVPPLLSHLP*

>peptide 3 (48 aa)
MTKGEDVWQQVDIMGNYQATRATAPRPPTSPSPTLNASPATPPRTRSQ*

>peptide 4 (49 aa)
LSLLSPSTRAAGCSSTERNTVVPESLPFSPTSRDLRHPTSPDSSAVQGF*

>peptide 5 (29 aa)
MCGSRSTSWATTRPPGQPHHALLRRLHRH*

Sequence

>CNT30295130
CTCTCTCTCCTTTCTCCCTCCACCCGAGCCGCCGGCTGCTCTTCCACCGAGAGGAACACAGTAGTCCCCGAGTCCCTCCCCTTCTCTCCCACCTCCCGTG
ATCTCCGCCATCCCACCTCCCCCGATTCATCTGCAGTTCAAGGTTTCTAGAGGCTACATCCAGAGCCCAGACAAGCTACTTCATGCCCAACTCCGCTCCC
TCCCGGCACTAACCCGTGCTCCGCCAATCGGGTCGAGGAAAGGACATCGCCCCACCGCACTTGCCGGATCTGCCGAGCCAGTGGCCAGATCCGCCGAGCC
AGTAGCCGAATCCATCGAGGTCGCGTCTGGATCTTGATCTTCTAGTCCTCCCCGCCTTCTCCTCCGTCGATGGCAGGCGGCAGAAACATGCAAGGCGCGT
GTGACTGCTCCGGCCAGAGAAAGGCGCGAGGTGCGAGGCGATGGCGCGTGGTCCAGCCGGGCACGGCACCGGCGGGCACCACTTTACCGGGGCGCGACTC
CGGTAGCCAACACCGGCGCCCAAATTGGATCCACCGAACCCAGGCGCGGCCTCCGACTTGCATGCAGTTTTGAGTTCATCAGGAGAGCGTGCGCGCGAGA
GAGCGCTGCTCCCGTCTTCCAGCGAACCCCAAGGAGAGCAGAGGAGGAGATGACCAAGGGCGAGGATGTGTGGCAGCAGGTCGACATCATGGGCAACTAC
CAGGCCACCAGGGCAACCGCACCACGCCCTCCTACGTCGCCTTCACCGACACTGAACGCCTCACCAGCGACGCCGCCAAGAACCAGGTCGCAATGAACCC
CACCAACACCGTCTTCGGTTCGCCGCGGTTGAGTACTGGAGATGGAGTGTGATTGGAATAGCGTCGACCCCCATTGGCATTTATCTTAGCGAGTTGCTGG
CCTCAAACATGTTTTGTACTGAGATTTCTATAATGTTGGCCTCAAACATGTTTTGTACTGAGATTTCTATAATGTTTCATGTGATGTTTCTGTAGTGTAG
ATATAGGCTCTGTTATGGTTGCGCATGTTTCTCGTGGTGTTGTAATGGTTGTCTTAATGTGACCTTAATGATGCTTAATGTGTGATTGGCTTACTGTTAA
TAAAGACTGGTTTTA