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Detailed information on CNT30116148


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 4e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678707Oryza nivaraSetaria viridis24.8912.1789.2956forward
CNT30522537Oryza nivaraSetaria italica4414.9192.9399forward
CNT30640054Oryza nivaraNymphaea colorata3216.8686.1172forward
CNT30615905Oryza nivaraSesamum indicum38.678.8586.2187forward
CNT3047102Oryza nivaraPrunus dulcis30.2210.5988.2468forward
CNT30122738Oryza nivaraPhyscomitrium patens23.567.8688.6853forward
CNT30299705Oryza nivaraTriticum aestivum30.2227.4295.5968forward
CNT30224351Oryza nivaraHordeum vulgare34.6724.391.0378forward
CNT30568254Oryza nivaraActinidia chinensis27.5612.4787.162forward
CNT30589749Oryza nivaraMusa acuminata36.4411.8885.3782forward
CNT30247704Oryza nivaraAvena sativa46.2212.1596.15104forward
CNT30453790Oryza nivaraSaccharum spontaneum31.119.3310070forward
CNT30142918Oryza nivaraLolium perenne36.892592.7783forward
CNT301423Oryza nivaraZea mays43.5632.8992.8698forward
CNT30684603Oryza nivaraTriticum urartu27.1120.290.1661forward
CNT30331159Oryza nivaraDioscorea rotundata24.8912.3689.2956forward
CNT30579116Oryza nivaraEchinochloa crusgalli4413.8392.9399forward
CNT30558853Oryza nivaraPanicum hallii4427.6593.9499forward

Expression of CNT30116148

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LRSRRLHDRRRSRHRRRRSPRLRRRRRSGGTGPR*

>peptide 2 (37 aa)
MLRPSSSLPFMPSMASRIDCSEEKVKRGRRSQPTSKRA

>peptide 3 (73 aa)
SVAAASTTAAVAATAAAVAPASAAAAGAAGLGLVDGDVAAVELLAVHALDGVAHRLLGGEGKEGEEKPTHLKES

Sequence

>CNT30116148
CCTCCGTAGCCGCCGCCTCCACGACCGCCGCCGTAGCCGCCACCGCCGCCGCCGTAGCCCCCGCCTCCGCCGCCGCCGCCGGAGCGGCGGGACTGGGCCT
CGTTGACGGTGATGTTGCGGCCGTCGAGCTCCTTGCCGTTCATGCCCTCGATGGCGTCGCGCATCGACTGCTCGGAGGAGAAGGTAAAGAGGGGGAGGAG
AAGCCAACCCACCTCAAAGAGAGCA