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Detailed information on CNT30579116


BLAST search results

BLAST vs Swiss-Prot:
sp|Q99070|GRP2_SORBI, E-value = 5e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299705Echinochloa crusgalliTriticum aestivum9.3627.0294.0367forward
CNT30142918Echinochloa crusgalliLolium perenne9.3620.1894.0367forward
CNT30684603Echinochloa crusgalliTriticum urartu13.8332.7884.8599forward
CNT30116148Echinochloa crusgalliOryza nivara13.5543.1192.7897forward

Expression of CNT30579116

Peptides detected in this lncRNA

>peptide 1 (68 aa)
GQIKSIQCTEICEQKPCSLFSHFIHCGNNSRTIANSNIHPSRGNQHLIERVTRDTKLRGNSDRTVTRC*

>peptide 2 (62 aa)
MLRPSSSLPFMASMASFMDCSEAKVTKPNPRDLPARPPTKQRYSTSAAAIFLPTKTLEPRTL*

>peptide 3 (32 aa)
GKSNQFSAQRYANKNLAHSFLISFIAETTHEP*

>peptide 4 (35 aa)
ANQINSVHRDMRTKTLLTLFSFHSLRKQLTNHSEQ*

Sequence

>CNT30579116
GGGCAAATCAAATCAATTCAGTGCACAGAGATATGCGAACAAAAACCTTGCTCACTCTTTTCTCATTTCATTCATTGCGGAAACAACTCACGAACCATAG
CGAACAGTAACATTCATCCATCACGGGGGAACCAACACCTAATCGAACGGGTAACACGGGACACTAAACTCAGGGGTAACTCGGACCGAACGGTAACACG
ATGCTAATAGATAGCTAGGATAACTTGGCCGCCGCCACGGGAGGGCCCACCCTTCAGTTCCTCCAGTTGCCACCGGAGTCACCGCGGCTGCCCCCGTAGC
CACCACCACCGTAGCCGCCCTCACGGCGACCGCCGCCGCCGTAGCCGCCGCCACCTCCTCCATAGCCGCCGCCGCCGTAGCTGCCGCCATCGCGACGACC
GCCGTAGCCGCCACCGCCGCCGCCGTAGCCGCCGCCGCCGCCGTAGCCGCCGCCACCTCCGCCGCGGGACTGGGCCTGGTTGACGGTGATGTTGCGGCCG
TCGAGCTCCTTGCCGTTCATGGCCTCGATGGCGTCGTTCATGGACTGCTCCGAGGCGAAGGTGACGAAGCCGAACCCGCGGGACCTCCCGGCGAGGCCGC
CGACGAAGCAGCGGTACTCCACGTCCGCCGCCGCCATCTTCCTTCCCACTAAAACCCTAGAACCGAGGACTTTGTAAGAGGGGGAGGAGAAGCCAACCCG
CCTCGAGAGAGCACGG