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Detailed information on CNT30122738


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299705Physcomitrium patensTriticum aestivum9.6426.2189.2365forward
CNT30116148Physcomitrium patensOryza nivara7.8623.5688.6853forward

Expression of CNT30122738

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPIPQTDTSTGTTRGYPTLGTVKDDPLFCTAERSQKQITSNRSNDPHSKDAVRSQSRSASQNHQRFQPP*

>peptide 2 (54 aa)
MLRPSNSWPFISLMAAFIEFSSAKVTNPNPRDLPVSLSEITLLCTTSPKGRNAPS

>peptide 3 (31 aa)
INQHALASKPELPCPFHKQTLVQVPRGAILL*

Sequence

>CNT30122738
ATTAACCAGCATGCCCTAGCATCAAAACCAGAACTGCCATGCCCATTCCACAAACAGACACTAGTACAGGTACCACGAGGGGCTATCCTACTTTAGGAAC
AGTAAAGGACGATCCCTTGTTCTGCACTGCAGAAAGATCACAAAAACAAATAACAAGTAACAGGTCCAACGACCCCCACAGCAAAGACGCCGTCAGATCT
CAGTCCCGGAGTGCTTCCCAAAACCACCAGAGGTTTCAACCACCTTAACGGCTTCAGTACTCGGGTTGGCGGTCGTTCCTCCAGTTCCCAGAGCTGGGTC
CTCCACGGCCACCGTAGCCGCCACCACCACCGCCTCCGTAGCCTCCACCACGGCTTCCTCCATAACCACTACCTTCACGGTCACCTCCTCCACGGCTTCC
ACCGTAACCTCCTCCATAGCCACCTCCTCCTTGCTCTCTGCGGCCGTAGCCACCACCGCCGCCACCGCCACCACCGCCTCCACCACGAGACTGGGCTTGG
TTGACGGTGATGTTGCGACCGTCCAACTCCTGGCCGTTCATCTCCTTGATGGCAGCGTTCATTGAGTTCTCATCGGCGAAAGTAACAAACCCAAACCCGC
GAGACCTTCCGGTCTCCCTGTCAGAGATCACCTTACTCTGCACAACCTCGCCGAAGGGACGGAACGCACCCTCC