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Detailed information on CNT30615905


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 6e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373658Sesamum indicumArabidopsis thaliana13.9451.783.21137forward
CNT30710437Sesamum indicumGlycine max9.0520.1883.1589forward
CNT30299705Sesamum indicumTriticum aestivum6.6126.2186.1565forward
CNT30568254Sesamum indicumActinidia chinensis11.522.7483.19113forward
CNT3060770Sesamum indicumArabidopsis lyrata8.1424.028580forward
CNT30597393Sesamum indicumFraxinus excelsior15.5637.6884.97153forward
CNT301423Sesamum indicumZea mays8.6528.5285.8885forward
CNT30116148Sesamum indicumOryza nivara8.8538.6786.2187forward
CNT30558853Sesamum indicumPanicum hallii11.1930.7382.73110forward

Expression of CNT30615905

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KNCNNLNLLHSTELCKHRFIDGLTNTKQLLQHEVKNTVTN*

Sequence

>CNT30615905
TCAAGAATTGTAACAACCTCAATTTACTTCATTCCACGGAACTCTGTAAACATAGATTCATAGACGGACTTACGAACACAAAGCAACTCCTCCAACACGA
GGTCAAAAATACAGTAACCAACTAACCCAGAGCATGAATAAACCACAAGACTTCAATACGGAATTAGTAAATCAACCCAAGGTGAGAACTGGAGATCACT
AAAACTCTTAATCCCTCCAGTTTCCCTCAGAGGCACCACCACCTCTGGAATAACCACGGTCACCACCGTAGCCGCCACCGCGGCCGCCTCCATAACCACC
CTCACGGCGTCCATAGCCACCGCCGCCACCTCCATAACCACCCTCACGGCGTCCATAGCCACCGCCACCTCCTCCATAACCACCTTCACGGCGAGGCCCA
CGGAATCCCCCACCGCCTCCGCCACCGCTTCCGCGGGACTGAGCCTCGTTGACCGTGATATTACGGCCGTCGAGTTCCTGTCCGTTCATCCCCTCGATTG
CGTCCCTCATCGCCTGCTCATCCTTAAAAGTAACGAATCCGAAGCCCCTAGATCTTCCGGTCTCGCGATCGTTAATAATCTGCAACAGAGAAGAAACAAA
ACAAAAACAAACATCAGATCCAACCAAATCTCAACCGGATCTCAACTGAAAAAGCGATTTATCTGATCTTCGACCCTCTGGTGAAAAAGAGGAAGACAGA
ACGTACCTTTTCAGGGTAACAGTAGTAACAGTAACAGTAGTAACGTTAACAGATCAGAGAGAATCAAGTCGGATCCGATCTCTGCGACCAACCGACCTTC
GATTCGATGACTTCGCCGAATTGGGAGAAGGCCTGCTCGAGTGACTGATCGGTGGTGGCCCAAGCCAAACCACCGACAAAACATCTAAATTCAACATCAG
CGGCCGCCATTAATTTTTACTGAGTATTTCTAAAGAGAATAAATGAGAGAAAGAGGGGGTATAATACGAAACCCTCCTTAAAG