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Detailed information on CNT30558853


BLAST search results

BLAST vs Swiss-Prot:
sp|Q99070|GRP2_SORBI, E-value = 4e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678636Panicum halliiSetaria viridis46.6544.5388.02167forward
CNT30522537Panicum halliiSetaria italica36.3119.5895.38130forward
CNT30615905Panicum halliiSesamum indicum23.748.6583.5385forward
CNT30299705Panicum halliiTriticum aestivum18.7227.0294.0367forward
CNT30224351Panicum halliiHordeum vulgare35.239.2584.92126forward
CNT30247704Panicum halliiAvena sativa69.2728.9784.68248forward
CNT30453790Panicum halliiSaccharum spontaneum35.4716.9392.13127forward
CNT30142918Panicum halliiLolium perenne18.7220.1894.0367forward
CNT301423Panicum halliiZea mays26.8232.2192.7196forward
CNT30227902Panicum halliiAnanas comosus20.399.2687.6773forward
CNT30684603Panicum halliiTriticum urartu29.3334.7786.67105forward
CNT30578993Panicum halliiEchinochloa crusgalli45.5329.2693.87163forward
CNT30116148Panicum halliiOryza nivara27.0943.1193.8197forward

Expression of CNT30558853

Peptides detected in this lncRNA

>peptide 1 (65 aa)
AVATAAAATAAGLGLVDGDVAAVELLAVHGLDGVQHRLLRGEGDEAEPAGPPRLTERTLESRTSP*

>peptide 2 (84 aa)
MLRPSSSLPFMASMASSIDCSVEKVTKPNPRDLPVSRNGPWSRGRRRRRRRPAGGTRCRWPRRGRRRSSGTPHPPPPSPFQLKP*

Sequence

>CNT30558853
GCCGTAGCCACCGCCGCCGCCGCCACCGCCGCGGGACTGGGCCTGGTTGACGGTGATGTTGCGGCCGTCGAGCTCCTTGCCGTTCATGGCCTCGATGGCG
TCCAGCATCGACTGCTCCGTGGAGAAGGTGACGAAGCCGAACCCGCGGGACCTCCCCGTCTCACGGAACGGACCTTGGAGTCGAGGACGTCGCCGTAGGA
GGCGAAGGCCTGCTGGAGGGACGCGTTGTCGGTGGCCCAGGCGAGGCCGCCGACGAAGCAGCGGTACTCCACATCCGCCGCCGCCATCTCCCTTCCAACT
AAAACCCTAGAACCGAGGACTTGGTAAGAGGGGGAGGAGAAGCCAACCCACCTCTGAG