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Detailed information on CNT3047102


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 7e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374608Prunus dulcisArabidopsis thaliana12.9322.0284.3483forward
CNT301423Prunus dulcisZea mays10.4422.4886.5767forward
CNT30116148Prunus dulcisOryza nivara10.5930.2288.2468forward
CNT30724703Prunus dulcisLupinus angustifolius12.6225.2386.4281forward

Expression of CNT3047102

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLRPSRFWPFMPSIASLMAFSLLKEEENKRARRTATPKASLYRASSPSTRVSLFGYSGSNPNL*

>peptide 2 (28 aa)
MMFGYGINNISIPVLKSLSGHVICLVRFS

Sequence

>CNT3047102
CCAGAAACCACCTAAACCCTAGAACATATCAAAAAAGCAACACTAAATTCCCAAACCCTAAACCTAAAATTTAACTCCTCCAGCTGCCGCCTTCAGAGCC
ACCGCTGCCCCTGGAATAGCGAGCGCCGCCGCCCTCACCACCCCCATAACCACCTTCACGACGGCCACCACCGCCATATCCACCACCTCCACTGCCATAT
CCACCACCACCGCCTCCACGGCTGTAGCCACCACCCCCGCCTTCACGCCGGCCGCCACCTCCGTAGCCACCACCACCGCCATATCCCCCGCCGCCGCCTC
CGCGGCTGTAACCTCCTCCGTTGCCGCCGCCGCCGCTTCCACGAGACTGAGCCTCGTTAACGGTGATGTTACGGCCGTCGAGGTTCTGGCCGTTCATGCC
TTCGATCGCGTCCCTCATGGCCTTCTCGTTGCTGAAGGAAGAAGAGAACAAGAGAGCACGAAGGACAGCTACGCCCAAAGCCTCGTTATATAGAGCCTCT
TCCCCCTCAACTAGGGTTAGCTTGTTTGGTTACTCGGGTTCAAATCCAAACCTATGATGTTTGGTTACGGGATTAATAATATCTCTATCCCGGTTTTGAA
ATCATTATCAGGACACGTCATCTGTTTGGTACGTTTTTCGCT