Detailed information on CNT30142918


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03250|RBG7_ARATH, E-value = 5e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299705Lolium perenneTriticum aestivum19.5826.2192.3165forward
CNT30224351Lolium perenneHordeum vulgare20.4821.1888.2468forward
CNT30453790Lolium perenneSaccharum spontaneum24.110.6791.2580forward
CNT301423Lolium perenneZea mays28.9232.2189.5896forward
CNT30722083Lolium perenneTriticum spelta29.8217.5287.8899forward
CNT30579116Lolium perenneEchinochloa crusgalli20.189.3694.0367forward
CNT30116148Lolium perenneOryza nivara2536.8992.7783forward
CNT30558853Lolium perennePanicum hallii20.1818.7294.0367forward

Expression of CNT30142918

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LRSRRLRRRAGRRSRLRRPRRRSGATGPR*

>peptide 2 (77 aa)
ASVAAASAAALAAVAASAAPAAGAARLGLVDGDVASVELLPAHGLDGVAHGLVGGEGEPADEAPVLRAAVRHRCPTN*

>peptide 3 (77 aa)
MLRPSSSFPLMASMALRMASSVAKASPPTKHRYSAPPSAIAVPRTSATETLTRLASGLSDPNQNRTGRGGEEKPTPRA

Sequence

>CNT30142918
GCCTCCGTAGCCGCCGCCTCCGCCGCCGCGCTGGCCGCCGTAGCCGCCTCCGCCGCCCCCGCCGCCGGAGCGGCGCGACTGGGCCTCGTTGACGGTGATG
TTGCGTCCGTCGAGCTCCTTCCCGCTCATGGCCTCGATGGCGTTGCGCATGGCCTCGTCGGTGGCGAAGGCGAGCCCGCCGACGAAGCACCGGTACTCCG
CGCCGCCGTCCGCCATCGCTGTCCCACGAACTAGTGCTACGGAAACCCTAACTAGGCTAGCTAGCGGACTCTCGGACCCGAACCAGAACCGAACCGGAAG
GGGAGGGGAGGAGAAGCCAACCCCGAGAGCGA