Detailed information on CNT301423


BLAST search results

BLAST vs Swiss-Prot:
sp|P10979|GRPA_MAIZE, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615905Zea maysSesamum indicum28.528.6585.8885forward
CNT3047102Zea maysPrunus dulcis22.4810.4486.5767forward
CNT30224351Zea maysHordeum vulgare25.8423.9988.3177forward
CNT30568254Zea maysActinidia chinensis20.4712.2786.8961forward
CNT30247497Zea maysAvena sativa54.3623.1189.51162forward
CNT30453790Zea maysSaccharum spontaneum61.4124.490.16183forward
CNT30142918Zea maysLolium perenne32.2128.9289.5896forward
CNT30684603Zea maysTriticum urartu20.1319.8786.6760forward
CNT30116148Zea maysOryza nivara32.8943.5692.8698forward
CNT30558853Zea maysPanicum hallii34.5628.7793.2103forward

Expression of CNT301423

Peptides detected in this lncRNA

>peptide 1 (95 aa)
PPPPRPPRDWASLTVMLRPSSSLPFMPSMAFRIASSVEKALWREWSSVAQARPPTKQRYSTSDAAISIRSPTNPNPGEPHEPEPEPEGEEKPTHL*

>peptide 2 (98 aa)
AAASTAAAGLGLVDGDVAAVQLLAVHALDGVPHRLLRGEGVVEGVVVRGPGEAADEAAVLNIRRRHLDPLTHEPEPRRTSRTRTRTGGGGEANPPLRKH

Sequence

>CNT301423
CGCCGCCGCCTCCACGGCCGCCGCGGGACTGGGCCTCGTTGACGGTGATGTTGCGGCCGTCCAGCTCCTTGCCGTTCATGCCCTCGATGGCGTTCCGCAT
CGCCTCCTCCGTGGAGAAGGCGTTGTGGAGGGAGTGGTCGTCCGTGGCCCAGGCGAGGCCGCCGACGAAGCAGCGGTACTCAACATCCGACGCCGCCATC
TCGATCCGCTCACCCACGAACCCGAACCCCGGAGAACCTCACGAACCCGAACCCGAACCGGAGGGGGAGGAGAAGCCAACCCACCTCTAAGAAAGCAC