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Detailed information on CNT30640054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116148Nymphaea colorataOryza nivara16.863286.1172forward

Expression of CNT30640054

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MKIDRKEDRDPDSEHFLALVAAQNPPSTAAAAEQISQTERRRNRKGGCNPTRPW

>peptide 2 (61 aa)
RLRYGGCPHHSLLHRSLLHRSLRCHHPSCRSRRRCRHRRYRCGNRRRLRHHHRCRHEAGPR*

>peptide 3 (88 aa)
AFATAAAPTIASSTVASSTVASVATTPPAVAAAVAATAVTAAETAAASATTTVAATRLGLVDGDIPPCSSFPFIPSMASRMACSSRKP*

Sequence

>CNT30640054
CCGCCTTCGCTACGGCGGCTGCCCCCACCATAGCCTCCTCCACCGTAGCCTCCTCCACCGTAGCCTCCGTTGCCACCACCCCTCCTGCCGTAGCCGCCGC
CGTTGCCGCCACCGCCGTTACCGCTGCGGAAACCGCCGCCGCCTCCGCCACCACCACCGTTGCCGCCACGAGGCTGGGCCTCGTTGACGGTGATATTCCT
CCGTGCAGCTCCTTCCCGTTCATCCCCTCAATGGCATCGCGCATGGCTTGCTCTTCACGGAAGCCATGAAGATAGACAGAAAGGAAGATAGAGATCCCGA
TTCCGAACACTTCCTCGCCCTCGTCGCCGCCCAGAACCCTCCAAGTACCGCCGCCGCCGCAGAACAAATATCTCAAACCGAACGAAGAAGAAACAGGAAA
GGGGGGTGTAACCCAACCCGCCCCTGG