Detailed information on CNT30568254


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 9e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373658Actinidia chinensisArabidopsis thaliana19.5236.682.4797forward
CNT30615905Actinidia chinensisSesamum indicum22.7411.583.19113forward
CNT30508390Actinidia chinensisSolanum lycopersicum28.373.4384.4141forward
CNT301423Actinidia chinensisZea mays12.2720.4786.8961forward
CNT30116148Actinidia chinensisOryza nivara12.4727.5687.162forward
CNT30724703Actinidia chinensisLupinus angustifolius15.6924.387.1878forward

Expression of CNT30568254

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SSSHRQRRLPWSSGDHRRLHRRNRGHASLTVMLRPSRS*

>peptide 2 (29 aa)
PPVPIGSAASPGVAGTTAASTAVTAVTPR*

>peptide 3 (34 aa)
MKLKSDRSSSFDKKKMNVPFQGIKKVTYRVNREQ*

Sequence

>CNT30568254
CCTCCAGTTCCCATCGGCAGCGCCGCCTCCCCTGGAGTAGCGGGGACCACCGCCGCCTCCACCGCCGTAACCGCGGTCACGCCTCGTTGACGGTGATGTT
GCGCCCGTCAAGATCCTGACCATTCATTCCCTCGATTGCGTCCCTCATGGATTGCTCATCCTTGAACGTCACGAACCCAAACCCCCTCGATCTGCCAGTT
TCTCTATCGTTGATGATCTGAAAACGAAAAACAAACCATAAGAAGATCAGATTCGATCAGATCTACAACATCGAACCAAATAATACACAAATGAAACTGA
AAAGCGATCGATCTTCATCTTTTGACAAGAAGAAGATGAACGTACCATTTCAGGGGATCAAAAAAGTAACATATAGAGTTAACAGAGAACAGTAAAACCA
GAGAGAGTAACAGAGAACAGATCGGTGAGTCAACAAAGCCGAATCGGCCGGATCCGATCTCTGCGACGCTGGATCTAACGGACCTTCGATTCAACGA