Detailed information on CNT30684603


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03878|GRP1_DAUCA, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522537Triticum urartuSetaria italica54.324.784.15164forward
CNT30298672Triticum urartuTriticum aestivum31.1320.798.9494forward
CNT30224351Triticum urartuHordeum vulgare58.6155.1495.48177forward
CNT30247704Triticum urartuAvena sativa30.7910.8684.9593forward
CNT30453790Triticum urartuSaccharum spontaneum33.7713.683.33102forward
CNT301423Triticum urartuZea mays19.8720.1386.6760forward
CNT30227902Triticum urartuAnanas comosus26.4910.1583.7580forward
CNT30579116Triticum urartuEchinochloa crusgalli32.7813.8384.8599forward
CNT30116148Triticum urartuOryza nivara20.227.1190.1661forward
CNT30558853Triticum urartuPanicum hallii34.7729.3386.67105forward

Expression of CNT30684603

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LRPSSSLPFISSMAWRIDSSLPKVTKPNPRDLPVSRLLSSVAQARPPTKQRYSVSAMDLPSSLPKP*

>peptide 2 (68 aa)
VAPVELLAVHLLDGLAHRLLAAESDEAEPTGPPRLAVVVVGGPGEAAHEAAVLRLRHGSPFLSTETLD*

Sequence

>CNT30684603
GTTGCGCCCGTCGAGCTCCTTGCCGTTCATCTCCTCGATGGCCTGGCGCATCGACTCCTCGCTGCCGAAAGTGACGAAGCCGAACCCACGGGACCTCCCC
GTCTCGCGGTTGTTGTCGTCGGTGGCCCAGGCGAGGCCGCCCACGAAGCAGCGGTACTCCGTCTCCGCCATGGATCTCCCTTCCTCTCTACCGAAACCCT
AGACTAGGCTAGCTACTCGGCCTCTCTCTCGAACCGAACCCGAACCGAACCAGAACCCGAACCGGAAGGGGAGGAGAAGCCAACCCCGAGAGCGATGAGG
AG