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Detailed information on CNT30247704


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03878|GRP1_DAUCA, E-value = 4e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299705Avena sativaTriticum aestivum7.8327.0292.5467forward
CNT30224351Avena sativaHordeum vulgare9.1124.388.4678forward
CNT30137127Avena sativaLolium perenne19.6358.3385.71168forward
CNT30684603Avena sativaTriticum urartu10.8630.7984.9593forward
CNT30116148Avena sativaOryza nivara11.3343.1196.9197forward
CNT30558853Avena sativaPanicum hallii28.9769.2784.68248forward

Expression of CNT30247704

Peptides detected in this lncRNA

>peptide 1 (46 aa)
RAHRDEHERRCEQNQAHSFSHFISRDDSKRNSDTGHDGNRNSSTNT*

>peptide 2 (55 aa)
EHTETSTNGDANRTRPTHFLISFLGMIANGTVTRDTMETGTVARTPNGNHNHLKP*

>peptide 3 (81 aa)
MLRPSRSWPFMPSMASRIDFSEEKVTKPNPRERPVSLIHTLESVISPNWEKACSRERSSVAQARPPTKQRYSTSAIPPTKP*

Sequence

>CNT30247704
CAGAGCACACAGAGACGAGCACGAACGGAGATGCGAACAGAACCAGGCCCACTCATTTTCTCATTTCATTTCTCGGGATGATAGCAAACGGAACAGTGAC
ACGGGACACGATGGAAACAGGAACAGTAGCACGAACACCTAATGGTAACCATAATCATCTCAAACCCTAAGCAATGGAGTGAGACCTAGGATACTCTGGA
GCGATGACACGAAACACATAAACGATAAGCTAGGATAACTGGCCACGAGGGGCCCCACCATTCAGTTCCTCCAGTTGCCGCCGGAGTCGCCGCCGCCGCC
GTAGCCGCCGCCGCCACCACCGTAGCCTCCACCGCCCTCACGGCGCTGGTAGCCGCCGCCGCCACCTCCGTAGCCGCCGCCACCACCACCATAGCCGCCG
CCGCCACCTCCGTAGCCACGGCCGCCACCACGACCTCCGCCGCCGCCGCCGGAGCCGCGGGACTGGGCCTCGTTGACGGTGATGTTGCGGCCGTCGAGGT
CCTGGCCGTTCATGCCCTCGATGGCGTCGCGCATCGACTTCTCGGAGGAGAAGGTGACGAAGCCGAACCCGCGGGAACGGCCGGTCTCCCTGATTCATAC
CTTGGAGTCGGTGATCTCGCCGAACTGGGAGAAGGCCTGCTCGAGGGAGCGGTCGTCAGTGGCCCAGGCGAGGCCGCCCACGAAGCAACGGTACTCGACT
TCCGCCATTCCTCCCACTAAACCCTAAACGAACCGGAACCGGGAACGAGGACTAGTGAGGGGGAGGAGAAGCCAGCCCACCTCTATGAAAGCACGAGGAG
TCAAGGTATGCCCTGCCCCCGAATTTATAGGCCGCGCGGCGCCACCAGGACCGTCG