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Detailed information on CNT30299705


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03878|GRP1_DAUCA, E-value = 6e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522537Triticum aestivumSetaria italica27.4210.2494.1268forward
CNT30615905Triticum aestivumSesamum indicum26.216.6186.1565forward
CNT30122738Triticum aestivumPhyscomitrium patens26.219.6489.2365forward
CNT30224351Triticum aestivumHordeum vulgare63.3148.9189.81157forward
CNT30247704Triticum aestivumAvena sativa27.427.9492.6568forward
CNT30453790Triticum aestivumSaccharum spontaneum27.429.0795.5968forward
CNT30142918Triticum aestivumLolium perenne26.2119.5892.3165forward
CNT301496Triticum aestivumZea mays51.6124.1190.62128forward
CNT30331159Triticum aestivumDioscorea rotundata22.9812.5887.7257forward
CNT30579116Triticum aestivumEchinochloa crusgalli27.429.594.1268forward
CNT30116148Triticum aestivumOryza nivara27.4230.2295.5968forward
CNT30558853Triticum aestivumPanicum hallii27.4218.9994.1268forward

Expression of CNT30299705

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RDWASLTVMLRPSSSLPFISSMACWRLLSSVAQARPPTKQRYSVSAMDGSPSPFLSTETLD*

>peptide 2 (62 aa)
GLGLVDGDVAPVELLAVHLLDGLLEVVVVGGPGEAAHEAAVLRLRHGWISLSLPLYGNPRLG*

Sequence

>CNT30299705
CGGGACTGGGCCTCGTTGACGGTGATGTTGCGCCCGTCGAGCTCCTTGCCGTTCATCTCCTCGATGGCCTGCTGGAGGTTGTTGTCGTCGGTGGCCCAGG
CGAGGCCGCCCACGAAGCAGCGGTACTCCGTCTCCGCCATGGATGGATCTCCCTCTCCCTTCCTCTCTACGGAAACCCTAGACTAGGCTAGCTACTCTCG
GACCCGAACCGAACCAGAACCCGAACCGGAAGGGGAGGAGAAGCCAAC