Detailed information on CNT30453790


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697760Saccharum spontaneumOryza sativa7.4720.7492.8656forward
CNT30299705Saccharum spontaneumTriticum aestivum8.6726.2195.3865forward
CNT30142918Saccharum spontaneumLolium perenne10.6724.191.2580forward
CNT301423Saccharum spontaneumZea mays24.461.4190.16183forward
CNT30684603Saccharum spontaneumTriticum urartu13.633.7783.33102forward
CNT30116148Saccharum spontaneumOryza nivara8.829.3310066forward
CNT30558853Saccharum spontaneumPanicum hallii16.6734.9292125forward

Expression of CNT30453790

Peptides detected in this lncRNA

>peptide 1 (46 aa)
DEDEHSTNNNIEGASLRSKTQMGNNNKHEHTDTTTTTNNKINPALD*

>peptide 2 (94 aa)
MLRPSSSLPFMPSMALRIASSVEKVTKPKPRDLAVGAEGGVEGVVVGGPGEAADEAAVLNVRCRHLFRSPTNPNPENLTNPNLRGRRSQPTSERA

>peptide 3 (30 aa)
MPPSLPLTHEPEPGEPDEPEPEGEEKPTHL*

>peptide 4 (41 aa)
KTRTNTALTTTSKERACDQKHRWATTTNTNTQTRRQRRTTR*

Sequence

>CNT30453790
AAGACGAGGACGAACACAGCACTAACAACAACATCGAAGGAGCGAGCTTGCGATCAAAAACACAGATGGGCAACAACAACAAACACGAACACACAGACAC
GACGACAACGACGAACAACAAGATAAACCCCGCTCTGGACTAGGGTAACACAGCAACACGGTAGCAGTAGCGAACAAGATAACTTGGCCGCGCGGGCCCC
ACCGCTCAGTTCCTCCAGTTCCCCTCGGAGTTGCCGTACCCGCCGCCGCGGCTGCCACCGCCGTAGCCGCCACCGCCGCCGCCGTAGCCGCCACCGCCGC
CGCTGCGGCCACCGTAGCCACCGCCGCCGTAGCCGCCGCCGCCACCGCCGTAGCCACCTCCATCACGGCGGCCGTAGCCGCCACCGCCTCCACGGCCGCC
GCCGTAGCCGCCGCCACCCCCGCCGGAGCGCGGGCCGCCGCGGGACTGGGCCTCGTTGACGGTGATGTTGCGGCCGTCGAGCTCCTTGCCGTTCATGCCC
TCGATGGCGCTCCGCATCGCCTCCTCCGTCGAGAAGGTGACGAAGCCGAAGCCGCGGGACCTCGCCGTAGGTGCTGAAGGCGGTGTGGAGGGAGTTGTCG
TCGGTGGCCCAGGCGAGGCCGCCGACGAAGCAGCGGTACTCAACGTCCGATGCCGCCATCTCTTCCGCTCACCCACGAACCCGAACCCGGAGAACCTGAC
GAACCCGAACCTGAGGGGGAGGAGAAGCCAACCCACCTCTGAGAGAGCAC