Detailed information on CNT30224351


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43472|GRP_HORVU, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522537Hordeum vulgareSetaria italica56.3927.2682.87181forward
CNT30299705Hordeum vulgareTriticum aestivum37.6948.7990.91121forward
CNT30247704Hordeum vulgareAvena sativa24.39.1188.4678forward
CNT30142918Hordeum vulgareLolium perenne21.1820.4888.2468forward
CNT301423Hordeum vulgareZea mays23.9925.8488.3177forward
CNT30227902Hordeum vulgareAnanas comosus24.9210.1583.7580forward
CNT30684603Hordeum vulgareTriticum urartu55.1458.6195.48177forward
CNT30722083Hordeum vulgareTriticum spelta22.1212.5710071forward
CNT30116148Hordeum vulgareOryza nivara24.334.6791.0378forward
CNT30558853Hordeum vulgarePanicum hallii39.2535.284.92126forward

Expression of CNT30224351

Peptides detected in this lncRNA

>peptide 1 (78 aa)
ASLTVMLRPSSSLPFISSMAWRIDSSLPNVTNPNPRDLPVSRLWSSVAQARPPTKQRYSVSAMDLLLSFSSYENPRLG*

>peptide 2 (74 aa)
LVDGDAAPVELLAVHLLDGLAHRLLAPERHEPEPARPPRLTVVVVGGPGEAAHEAAVLRLRHGSPPLLLLLRKP*

Sequence

>CNT30224351
GCCTCGTTGACGGTGATGCTGCGCCCGTCGAGCTCCTTGCCGTTCATCTCCTCGATGGCCTGGCGCATCGACTCCTCGCTCCCGAACGTCACGAACCCGA
ACCCGCGCGACCTCCCCGTCTCACGGTTGTGGTCGTCGGTGGCCCAGGCGAGGCCGCCCACGAAGCAGCGGTACTCCGTCTCCGCCATGGATCTCCTCCT
CTCCTTCTCCTCCTACGAAAACCCTAGGCTAGGCTAGCTACTGTCTCTCGGACCCGAACCGAACCGAACCCGAACCGAACCAGGAACCCGAACCGGAAGG
GGAGGAGAAGCCAACCCCGAG