Detailed information on CNT30678707


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522537Setaria viridisSetaria italica52.1736.14100240forward
CNT30247497Setaria viridisAvena sativa27.3917.9783.33126forward
CNT3010293Setaria viridisZea mays29.5738.4285.29136forward
CNT30578989Setaria viridisEchinochloa crusgalli45.4329.485.65209forward
CNT30116148Setaria viridisOryza nivara12.1724.8989.2956forward

Expression of CNT30678707

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MFSMASSIDCSVEKASWRDSLSVAHARPPTKQRYSTSAAAISLLLPLKNPKAEDLVRVGGVANPPLREH

>peptide 2 (52 aa)
CEQKPCSLFSSHFFSLRKQLGNGKHGEPTPNRTVTRDTKLGISNGNTMLIDS*

>peptide 3 (33 aa)
ANKNLAHSFLLISFHCGNNLGTVNMGNQHLIER*

Sequence

>CNT30678707
TGCGAACAAAAACCTTGCTCACTCTTTTCTTCTCATTTCTTTTCATTGCGGAAACAACTTGGGAACGGTAAACATGGGGAACCAACACCTAATAGAACGG
TAACACGGGACACTAAACTCGGGATCTCGAACGGTAACACGATGCTAATAGATAGCTAGGATAACTTGGCTGCTGCCTGCACGGGAGGGCCCACTCCGTC
AGTTCCTCCAGTTGCCACCAGATTCGCCGCGGCTGCCGCCCTCCTTGCCGTTCATGTTCTCGATGGCTTCGAGCATCGACTGCTCAGTGGAGAAGGCAAG
CTGGAGGGACTCGCTGTCGGTGGCCCATGCGAGGCCGCCGACGAAGCAACGGTACTCCACGTCCGCCGCCGCCATCTCCCTTCTTCTCCCACTGAAAAAC
CCTAAAGCCGAAGACTTGGTAAGAGTGGGAGGAGTAGCCAACCCACCTCTGAGAGAGCAC